View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16887_low_3 (Length: 374)
Name: NF16887_low_3
Description: NF16887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16887_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 58 - 340
Target Start/End: Complemental strand, 37814286 - 37814004
Alignment:
| Q |
58 |
atcatccttttgtagtttgccaatcaaattaattatatacacatcaccttatcttttagcataataaacacctaatcaactgttaattatttctacttga |
157 |
Q |
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| T |
37814286 |
atcatccttttgtagtttgccaatcaaattaattatatacacatcaccttatcttttagcataataaacacctaatcaactgttaattatttctacttga |
37814187 |
T |
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| Q |
158 |
ttannnnnnnnnnnnctgagcaatagtatttttacttgattgtgtaggcaaagatggacaagtgcatgtgtggctcagatacctgctattttcatgaacc |
257 |
Q |
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| T |
37814186 |
ttatttttcttttttctgagcaatagtatttttacttgattgtgtaggcaaagatggacaagtgcatgtgtggctcagatacctgctattttcatgaacc |
37814087 |
T |
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| Q |
258 |
cgctggagctgtaatcgcaagacttgcaagatcccaactaacttcgcctgaacctcatcgtaccactgtcaatcccaacacca |
340 |
Q |
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| T |
37814086 |
cgctggtgctgtaatcgcaagacttgcaagatcccaaccaacttcgcctgagcctcatcgtaacactgtcaatcccaacacca |
37814004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 58 - 340
Target Start/End: Original strand, 37646557 - 37646839
Alignment:
| Q |
58 |
atcatccttttgtagtttgccaatcaaattaattatatacacatcaccttatcttttagcataataaacacctaatcaactgttaattatttctacttga |
157 |
Q |
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| T |
37646557 |
atcatccttttgtagtttgccaatcaaattaattatatacacatcaccttatcttttagcataataaacacctaatcaactgttaattatttctacttga |
37646656 |
T |
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| Q |
158 |
ttannnnnnnnnnnnctgagcaatagtatttttacttgattgtgtaggcaaagatggacaagtgcatgtgtggctcagatacctgctattttcatgaacc |
257 |
Q |
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| T |
37646657 |
ttatttttcttttttctgagcaatagtatttttacttgattgtgtaggcacagatggacaagtgcatgtgtggctcagatacctgctattttcatgaacc |
37646756 |
T |
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| Q |
258 |
cgctggagctgtaatcgcaagacttgcaagatcccaactaacttcgcctgaacctcatcgtaccactgtcaatcccaacacca |
340 |
Q |
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| T |
37646757 |
cactggagctgtaatcgcaagacttgctagatcccaaccaacttcgcctgaacctcatcgtaacactgtcaatcccaacacca |
37646839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 275 - 356
Target Start/End: Original strand, 37637365 - 37637446
Alignment:
| Q |
275 |
caagacttgcaagatcccaactaacttcgcctgaacctcatcgtaccactgtcaatcccaacaccatcaacgactggtcacc |
356 |
Q |
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| T |
37637365 |
caagacttgcaagatcccaaccaacttcgcctgaacctcatcgtacccctgtcaatccaaacaccatcagcgactggtcacc |
37637446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 59 - 159
Target Start/End: Complemental strand, 37809184 - 37809089
Alignment:
| Q |
59 |
tcatccttttgtagtttgccaatcaaattaattatatacacatcaccttatcttttagcataataaacacctaatcaactgttaattatttctacttgat |
158 |
Q |
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| T |
37809184 |
tcatccttttgcagtttgccaatcaagtt--ttat---cacatcaccttatcttttagcataacaaacacctaatcagctgttaattatttctacttgat |
37809090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 155
Target Start/End: Original strand, 37637029 - 37637095
Alignment:
| Q |
89 |
attatatacacatcaccttatcttttagcataataaacacctaatcaactgttaattatttctactt |
155 |
Q |
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|||||||| |||| ||||| || |||||||||||||| ||||||||| ||||| ||||||||||| |
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| T |
37637029 |
attatatatacatgaccttgtcctttagcataataaatacctaatcagtggttaagtatttctactt |
37637095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 37637236 - 37637293
Alignment:
| Q |
260 |
ctggagctgtaatcgcaagacttgcaagatcccaactaacttcgcctgaacctcatcg |
317 |
Q |
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||||| ||||| || |||||||||||||||| |||| | |||| |||||||||||||| |
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| T |
37637236 |
ctggacctgtagtcacaagacttgcaagatctcaaccagcttcccctgaacctcatcg |
37637293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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