View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16888_high_1 (Length: 505)
Name: NF16888_high_1
Description: NF16888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16888_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 19 - 465
Target Start/End: Complemental strand, 53308930 - 53308484
Alignment:
| Q |
19 |
gatgcacctatgatatttttctgtcttctatgatcttgttgccatctttgggggtcaaaactgttcatcatgagtatagttgtgcaaatttaccaaagaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53308930 |
gatgcacctatgatatttttctgtcttctatgatcttgttgccatctttgggggtcaaaactgttcatcatgagtatagttgtgcaaatttaccaaagaa |
53308831 |
T |
|
| Q |
119 |
gaggaaatatatgtgcatgtgcagttgtgcactcaagagtcctagtgcaaatggtaattggatgtaactagttaattttgaaactaattgtaggtagaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
53308830 |
gaggaaatatatgtgcatgtgcagttgtgcactcaagagtcctagtgcaaatggtaattggatgtaactagttaattttgaatctaattgtaggtagaaa |
53308731 |
T |
|
| Q |
219 |
tggatcaaaacagaaaagggtttgtttgtggtgttcctggggcactatatttgatgatacatatatatatttgattgatgttgagaaatgaaaatgtaca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53308730 |
tggatcaaaacagaaaagggtttgtttgtggtgttcctggggcactatatttgatgatacatatatatatttgattgatgttgagaaatgaaaatgtaca |
53308631 |
T |
|
| Q |
319 |
tgtagtaagcacaaatgtcgggagtggtcagatagatgtctagaatccaccccactctcgtggcttagttttactttttcaagatcatatttaatagtat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53308630 |
tgtagtaagcacaaatgtcgggagtggtcagatagatgtctagaatccaccccactctcgtggcttagttttactttttcaagatcatatttaatagtat |
53308531 |
T |
|
| Q |
419 |
acacaaatcctataactattactactaatttttcccttataaaatat |
465 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53308530 |
actcaaatcctataactattactactaatttttcccttataaaatat |
53308484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University