View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16888_high_1_N (Length: 519)
Name: NF16888_high_1_N
Description: NF16888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16888_high_1_N |
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Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 21 - 507
Target Start/End: Original strand, 51114743 - 51115226
Alignment:
| Q |
21 |
tgtgaaactatcttaaaactaatcaacattcttctaattcctcgttgtgttgaaagttccatcgaaaattggcatctttctgcatacgcctgcatattat |
120 |
Q |
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| T |
51114743 |
tgtgaaactatcttaaaactaatcaatattcttctaattcctcgtcgtgttgaaagttccatcgaaaattggcatctttctgcatacgcctgcatattat |
51114842 |
T |
|
| Q |
121 |
gtttcttattttgaaattatgctttgtctgatattggtttttgaagctattgacaaactactcattcttttctgcattgattcgagtgtttaattagttt |
220 |
Q |
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| T |
51114843 |
gtttcttattttgaaattatgctttgtctgatattggtttttgaaactattgactgactactcattcttttctgcattgattcgagtgtttaattagttt |
51114942 |
T |
|
| Q |
221 |
taatatggtcaataacaaggtataatcaaaatctagtagcaaccttagatagtgttgaatgcacgttagttatcaaaaaggaaatcctgagtttggaaat |
320 |
Q |
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| T |
51114943 |
taatatggtcaataacaaggtataatcaaaatctagtagcaaccttagatagtgttgaatgcacgttagttatcaaaaaggaaatcctgagtttggaaat |
51115042 |
T |
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| Q |
321 |
taggtggttgttctctgtatcaatatttcaaatacaatggatggcttacaaaactatgactcaggaagattttggtgtatattttgttgtttctatttag |
420 |
Q |
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| T |
51115043 |
taggtggttgttctctgtttcaatatttcaaatacaatggatggcttacaaaactatgactcaggaagatttaggtgtacattttgttgtttctatttag |
51115142 |
T |
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| Q |
421 |
tttttgatcaactttcgttgttgcttaatgattctgtttgtggtgacttgattattgaatacacaagtctctcatgtatgctatttt |
507 |
Q |
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| T |
51115143 |
tttttgatcaactttcgttgttgcttaatgattctgtttgt-gtgacttgattattgaat--acaagtctctcatgtatgctatttt |
51115226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 73 - 156
Target Start/End: Original strand, 5768822 - 5768905
Alignment:
| Q |
73 |
aaagttccatcgaaaattggcatctttctgcatacgcctgcatattatgtttcttattttgaaattatgctttgtctgatattg |
156 |
Q |
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| T |
5768822 |
aaagttccatggaaatttggcatctttctgcttatggctacatattatgtttcttattttgaagttatcctttgtttgatattg |
5768905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 325 - 398
Target Start/End: Original strand, 1119125 - 1119198
Alignment:
| Q |
325 |
tggttgttctctgtatcaatatttcaaatacaatggatggcttacaaaactatgactcaggaagattttggtgt |
398 |
Q |
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| T |
1119125 |
tggttgttctctgtttcagtatttcagttacaatgtacggcttacaaaactacgactcaggaagattttggtgt |
1119198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 65 - 209
Target Start/End: Original strand, 1118657 - 1118800
Alignment:
| Q |
65 |
ttgtgttgaaagttccatcgaaaattggcatctttctgcatacgcctgcatattatgtttcttattttgaaattatgctttgtctgatattggtttttga |
164 |
Q |
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||||||||| | |||||| |||||| |||||||||||| | || |||||||||||||||||| | ||||||||||||||||| |||| |||||||| |
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| T |
1118657 |
ttgtgttgataattccatggaaaatatgcatctttctgctgagacccacatattatgtttcttattcttaaattatgctttgtctggtatt-gtttttga |
1118755 |
T |
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| Q |
165 |
agctattgacaaactactcattcttttctgcattgattcgagtgt |
209 |
Q |
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|| ||||||| | |||| ||||| ||||| |||||| |||||| |
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| T |
1118756 |
agatattgactacgtactgtttcttctctgctttgatttgagtgt |
1118800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 415
Target Start/End: Complemental strand, 29020718 - 29020664
Alignment:
| Q |
361 |
atggcttacaaaactatgactcaggaagattttggtgtatattttgttgtttcta |
415 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||| || |||||| |||| |
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| T |
29020718 |
atggtttacagaactatgactcaggaagattttggtgtattttgtgttgtctcta |
29020664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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