View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16888_high_2 (Length: 346)

Name: NF16888_high_2
Description: NF16888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16888_high_2
NF16888_high_2
[»] chr8 (1 HSPs)
chr8 (10-346)||(27177814-27178162)


Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 10 - 346
Target Start/End: Complemental strand, 27178162 - 27177814
Alignment:
Q  10 ataatactagtcatttcagttgttgcttgttttctcggacgcctttgcaaccgacgctacaataaaaacaacgacaaccaaaatcgtcaacataacagcc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27178162 ataatactagtcatttcagttgttgcttgttttctcggacgcctttgcaaccgacgctacaataaaaacaacgacaaccaaaatcgtcaacataacagcc 27178063  T
Q  110 tgcagagacggccggttaagccgtcgaataggcagcaacagattcatgattttcaaacaagagaagatgacattgaacttggtgttgacaaaagaatgcc 209  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27178062 tgcagagacggcccgttaagccgtcaaataggcagcaacagattcatgattttcaaacaagagaagatgacattgaacttggtgttgacaaaagaatgcc 27177963  T
Q  210 tccaccaataattactaggcctagaggacttgcttttgaaccaccacgcactgcaggatctcaaccacatggtcatgtta---------------atggt 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||| || | |               |||||    
T  27177962 tccaccaataattactaggcctagaggacttgcttttgaaccaccacgca---caggatctcaaccacatggtaatatgaaaggatctcaaccacatggt 27177866  T
Q  295 aatatgaaagattttgaaatgaaatctgatcatgaaagtgatcagcatagag 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27177865 aatatgaaagattttgaaatgaaatctgatcatgaaagtgatcagcatagag 27177814  T

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