View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16888_high_3 (Length: 331)
Name: NF16888_high_3
Description: NF16888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16888_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 37285661 - 37285342
Alignment:
| Q |
1 |
tttcaggtaccatttagtttccaaaagatcaaaatgtaataccagtatggaaaaagttttacataggagatttcaagttcaaagaagggatcatcactac |
100 |
Q |
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| T |
37285661 |
tttcaggtaccatttagtttccaaaagatcaaaatgtaataccagtatggaaaaagttttacataggagatttcaagttcaaagaagggatcatcactac |
37285562 |
T |
|
| Q |
101 |
atacatgtgcgttatgctggaggagctgaattatcctcttcttccagttccagcattgaaaaatatgttggagaggaaattcaagaggatatttcaatgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37285561 |
atacatgtgcgttatgctggaggagctgaattatcctcttcttctagttccagcattgaaaaaaatgttggagaggaaattcaagaggatatttcaatgg |
37285462 |
T |
|
| Q |
201 |
aaacattgatttggagggctatcaagttgcctatttactctgttgctttggtccctctcactgtgagcatctcaactatatatacttttagattaattgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37285461 |
aaacattgatttggagggctatcaagttgcctatttactctgttgctttggtccctctcactgtgagcatctcaactatatatacttttagattaattgt |
37285362 |
T |
|
| Q |
301 |
taaattcagcataggttcat |
320 |
Q |
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|||||||||||||||||||| |
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| T |
37285361 |
taaattcagcataggttcat |
37285342 |
T |
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