View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16888_high_4 (Length: 331)
Name: NF16888_high_4
Description: NF16888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16888_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 321
Target Start/End: Original strand, 298611 - 298912
Alignment:
| Q |
20 |
tcatttgagtgaatattcttccaaggtttaaggactcttgtaattgcctcaagtgatctttcagatgcagaatttaaggattggcaaagcatgtatgaag |
119 |
Q |
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| T |
298611 |
tcatttgagtgaatattcttccaaggtttaaggactcttgtaattgcctcaagtgatctttcagatgcagaatttaaggattggcaaagcatgtatgaag |
298710 |
T |
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| Q |
120 |
aggccggaacttcattgattgaccgagctacaaaactacgtcaaagaacagcacatgtagaatgcaaaccaaacctacttggagcaactagagttgagag |
219 |
Q |
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| T |
298711 |
aggccggaacttcattgattgaccgagctacaaaactacgtcaaagaacagcacatgtagaatgcaaaccaaacctacttggagcaactagagttgagag |
298810 |
T |
|
| Q |
220 |
gacaagctgcaagagggagaaacagaagccattgagtctctacggttagctggaattaaggtctggtgataagctagagactgcaatttcaattggtctg |
319 |
Q |
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| T |
298811 |
gacaagctgcaagagggagaaacagaagccattgagtctctacggctagctggaattaaggtctggtgataagctagagactgcaatttcaattggtctg |
298910 |
T |
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| Q |
320 |
tg |
321 |
Q |
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|| |
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| T |
298911 |
tg |
298912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 300819 - 301034
Alignment:
| Q |
20 |
tcatttgagtgaatattcttc-caaggtttaaggactcttgtaattgcctcaagtgatctttcagatgcagaatttaaggattggcaaagcatgtatgaa |
118 |
Q |
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| T |
300819 |
tcatttgagtgaatattatttgcaaggtttaaggactcttgtaattgcctcaagggaactttcggatgcagaatttaaggattggcaaagcatttatgaa |
300918 |
T |
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| Q |
119 |
gaggccggaacttcattgattgaccgagctacaaaactacgtcaaagaacagcacatgtagaatgcaaaccaaacctacttggagcaactagagttgaga |
218 |
Q |
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| T |
300919 |
gagggaagcacttcattgattaaccaaactgcaaaactacctcaaaaggaagcgcttgtagaattcaaactaaacctacttggggcaactggagtt--ga |
301016 |
T |
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| Q |
219 |
ggacaagctgcaagaggg |
236 |
Q |
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||||||| |||||||||| |
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| T |
301017 |
ggacaagatgcaagaggg |
301034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 318
Target Start/End: Original strand, 301033 - 301067
Alignment:
| Q |
284 |
ggtgataagctagagactgcaatttcaattggtct |
318 |
Q |
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| T |
301033 |
ggtgataagctagagactgcaatttcaattggtct |
301067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 285
Target Start/End: Complemental strand, 27465757 - 27465478
Alignment:
| Q |
5 |
gcatccaactcagaatcatttgagtgaatattcttc-caaggtttaaggactcttgtaattgcctcaagtgatctttcagatgcagaatttaaggattgg |
103 |
Q |
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|||| ||||||||| ||||||| ||||||||||||| |||||||| | || |||||| ||||||| || |||||| ||||| ||| || ||| ||| |
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| T |
27465757 |
gcatgcaactcagagtcatttgtgtgaatattcttcacaaggtttgcgcacccttgtagttgcctctagaagtctttctgatgctgaacttgtggagtgg |
27465658 |
T |
|
| Q |
104 |
caaagcatgtatgaagaggccggaacttcattgattgaccgagctacaaaactacgtcaaagaacagcacatgtagaatgcaaaccaaacctacttggag |
203 |
Q |
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|||| || ||||| |||||| | ||| | || | |||| |||| | ||||||||||||| | |||| | | |||||||||| ||| |||||||||| |
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| T |
27465657 |
caaaacaggtatggagaggcaagcactgcgttaactgacagagccagtaaactacgtcaaacagcagctcttatagaatgcaatttaaatctacttggag |
27465558 |
T |
|
| Q |
204 |
caactagagttgagaggacaagctgcaagagggagaaacagaagccattgagtctctacggttagctggaattaaggtctgg |
285 |
Q |
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||||| || ||||| ||||||||||||||||| | | |||||||||||||||| |||||| ||||||||| ||||||||| |
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| T |
27465557 |
caactggaattgag--gacaagctgcaagagggtgtaccagaagccattgagtccctacggcaagctggaatcaaggtctgg |
27465478 |
T |
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