View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16888_high_6 (Length: 303)

Name: NF16888_high_6
Description: NF16888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16888_high_6
NF16888_high_6
[»] chr2 (11 HSPs)
chr2 (13-303)||(18772043-18772330)
chr2 (91-299)||(18770181-18770392)
chr2 (208-299)||(12168959-12169051)
chr2 (211-299)||(18135861-18135949)
chr2 (208-297)||(15825141-15825230)
chr2 (208-299)||(19050448-19050539)
chr2 (208-299)||(45258165-45258256)
chr2 (208-287)||(45714982-45715061)
chr2 (209-299)||(12127676-12127766)
chr2 (211-299)||(3586353-3586441)
chr2 (211-299)||(36267488-36267576)
[»] chr8 (7 HSPs)
chr8 (208-297)||(24576598-24576687)
chr8 (210-288)||(3459508-3459586)
chr8 (253-299)||(6928103-6928149)
chr8 (209-299)||(13764977-13765067)
chr8 (253-299)||(24070884-24070930)
chr8 (208-299)||(26916911-26917002)
chr8 (253-299)||(17698298-17698344)
[»] chr4 (8 HSPs)
chr4 (208-299)||(12683772-12683863)
chr4 (212-299)||(47253268-47253355)
chr4 (210-299)||(15742166-15742255)
chr4 (253-299)||(19809733-19809779)
chr4 (208-299)||(29157089-29157180)
chr4 (221-279)||(16012504-16012562)
chr4 (253-299)||(19643734-19643780)
chr4 (208-276)||(13171066-13171134)
[»] chr3 (6 HSPs)
chr3 (205-299)||(12516169-12516263)
chr3 (208-299)||(14860112-14860203)
chr3 (224-299)||(17143762-17143837)
chr3 (253-299)||(28715501-28715547)
chr3 (211-299)||(1770815-1770903)
chr3 (255-299)||(28723787-28723831)
[»] chr6 (13 HSPs)
chr6 (208-299)||(34064182-34064273)
chr6 (205-300)||(18147290-18147385)
chr6 (209-299)||(14080472-14080561)
chr6 (211-299)||(689870-689958)
chr6 (208-299)||(31295548-31295639)
chr6 (253-299)||(14268463-14268509)
chr6 (208-297)||(19331695-19331784)
chr6 (253-295)||(3404879-3404921)
chr6 (209-299)||(12449596-12449686)
chr6 (253-299)||(17380129-17380175)
chr6 (253-299)||(19305496-19305542)
chr6 (208-298)||(22497312-22497402)
chr6 (209-287)||(25008415-25008493)
[»] chr1 (10 HSPs)
chr1 (212-299)||(5671761-5671848)
chr1 (208-299)||(12177373-12177464)
chr1 (208-299)||(22414762-22414853)
chr1 (211-299)||(33101520-33101608)
chr1 (208-295)||(26977727-26977814)
chr1 (209-300)||(34273075-34273166)
chr1 (208-299)||(52565567-52565658)
chr1 (211-299)||(16030385-16030473)
chr1 (208-299)||(23728833-23728924)
chr1 (208-264)||(48637538-48637594)
[»] scaffold0205 (1 HSPs)
scaffold0205 (209-303)||(22874-22968)
[»] scaffold0505 (1 HSPs)
scaffold0505 (211-299)||(7875-7963)
[»] scaffold0002 (2 HSPs)
scaffold0002 (227-299)||(121024-121096)
scaffold0002 (208-299)||(379703-379794)
[»] scaffold0140 (1 HSPs)
scaffold0140 (212-299)||(6289-6376)
[»] scaffold0074 (1 HSPs)
scaffold0074 (208-295)||(35240-35327)
[»] chr7 (13 HSPs)
chr7 (208-299)||(16987105-16987196)
chr7 (208-299)||(34854230-34854321)
chr7 (208-299)||(39879374-39879465)
chr7 (209-299)||(9867952-9868042)
chr7 (211-299)||(7486535-7486623)
chr7 (212-252)||(12265152-12265192)
chr7 (208-299)||(9135374-9135465)
chr7 (216-286)||(13159368-13159439)
chr7 (221-299)||(21161241-21161319)
chr7 (210-299)||(26762924-26763013)
chr7 (208-288)||(12644772-12644852)
chr7 (211-299)||(13292136-13292224)
chr7 (267-299)||(16203768-16203800)
[»] chr5 (5 HSPs)
chr5 (208-287)||(8938899-8938978)
chr5 (208-299)||(22865748-22865839)
chr5 (208-299)||(25537392-25537483)
chr5 (253-299)||(22903125-22903171)
chr5 (208-299)||(32418499-32418590)
[»] scaffold0023 (1 HSPs)
scaffold0023 (212-299)||(95823-95910)
[»] scaffold0263 (1 HSPs)
scaffold0263 (208-299)||(20510-20601)
[»] scaffold0294 (1 HSPs)
scaffold0294 (253-299)||(256-302)


Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 303
Target Start/End: Original strand, 18772043 - 18772330
Alignment:
Q  13 aatattctcaatctgactgcacaaacaatatttttgggaatacactagtgggcggacatttaaaacaattaactttcccaaaaattgttggccgaaaaag 112  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  18772043 aatattcccaatctgactgcacaaacaatatttttgggaatacactagtgggtggacatttaaaacaattaactttcccaaaaattgttggccggaaaag 18772142  T
Q  113 ttgaagagcctcaatacaatagatatatctgac-ccacaaacaagatccatgcactgttgtctggctggaaaagttgaagagcctaaaattgttgaaacg 211  Q
    |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18772143 ttgaagagcctcaatacaatagatatatctgactgcacaaacaggatccatgcactgttgtctggctggaaaagttgaagagcctaaaattgttgaaacg 18772242  T
Q  212 aaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtgacgtg 303  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||    ||||||||||| |||||||| ||||||||||||||    
T  18772243 aaaggtgtttgcaggcacgttagcactctgatgctcaaagtagtaatggaact----aagagtgtgtagaaagtgttgtgaaaagtgacgtg 18772330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 91 - 299
Target Start/End: Original strand, 18770181 - 18770392
Alignment:
Q  91 caaaaattgttggccgaaaaagttgaagagcctcaatacaatagatatatctgacc-cacaaacaagatccatgcactgttgtctggctggaaaagttga 189  Q
    |||||||||| ||| | |||||||||||| ||||||||||| |||||||||| ||  || ||||| |||||||||| || | ||||||||||||||||||    
T  18770181 caaaaattgtaggctggaaaagttgaagaccctcaatacaacagatatatctaactgcataaacaggatccatgcattgctatctggctggaaaagttga 18770280  T
Q  190 agagcctaaaattgttgaaacgaaaggtgcttgc--aggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgt 287  Q
     |||||||||||||||| |||||||||||| | |  |||||||||| |||||||| ||||||   ||||||| || | |||||||||||||| |||||||    
T  18770281 tgagcctaaaattgttggaacgaaaggtgcctacataggcacgttagcactctgacgctcaagtcagtaatgaaattgagaaagagtgtgtagaaagtgt 18770380  T
Q  288 tttgaaaagtga 299  Q
    | ||||||||||    
T  18770381 tgtgaaaagtga 18770392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 12168959 - 12169051
Alignment:
Q  208 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagt-agtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||||||||  ||||||||| |||||||||  | |||  |||| ||||||||||||||||||||||||||| |||||||| ||||||||||    
T  12168959 aacgaaaggtgtctgcaggcacattaacactccaacgcttcaagtcagtaatggaactaagaaagagtgtgtagaaagtgttgtgaaaagtga 12169051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 299
Target Start/End: Original strand, 18135861 - 18135949
Alignment:
Q  211 gaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    ||||||||| || ||||||||||  ||||||| ||||||  ||||||||||||| ||||||||||||||  ||||||| | ||||||||    
T  18135861 gaaaggtgcctgtaggcacgttagtactctgacgctcaagttagtaatggaactgagaaagagtgtgtaagaagtgttgtcaaaagtga 18135949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 297
Target Start/End: Original strand, 15825141 - 15825230
Alignment:
Q  208 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagt 297  Q
    ||||||| |||  ||||||||||||| |||| ||| ||||||    ||||||||||| |||||||||||||| |||||||| ||||||||    
T  15825141 aacgaaatgtgtctgcaggcacgttagcactttgacgctcaagtcggtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagt 15825230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 299
Target Start/End: Complemental strand, 19050539 - 19050448
Alignment:
Q  208 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    ||||||||||  |||||| | ||||| |||||||| ||||||   |||||| |||||||||||||| |||||  ||||||| ||||||||||    
T  19050539 aacgaaaggtatttgcagacccgttagcactctgacgctcaagtcagtaatagaactaagaaagagagtgtaagaagtgttgtgaaaagtga 19050448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 299
Target Start/End: Complemental strand, 45258256 - 45258165
Alignment:
Q  208 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||||| ||  |||||||||||||||||||  | ||||||   ||||||| |||||||||||| |||||  |||||||| ||||||||||    
T  45258256 aacgaaagatgtctgcaggcacgttaacactccaaagctcaagtaagtaatgaaactaagaaagaatgtgtcgaaagtgttgtgaaaagtga 45258165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 287
Target Start/End: Original strand, 45714982 - 45715061
Alignment:
Q  208 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgt 287  Q
    |||||||||||| ||||||||||||| |||||  | ||||||   ||||||| |||| |||||||||||||| |||||||    
T  45714982 aacgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcagtaatgaaactgagaaagagtgtgtaaaaagtgt 45715061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 299
Target Start/End: Complemental strand, 12127766 - 12127676
Alignment:
Q  209 acgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    ||||||||| | ||||||||||||| |||||  | ||||||   ||||||| ||||||||| | ||||||| |||||||| ||||||||||    
T  12127766 acgaaaggtacctgcaggcacgttagcactccaacgctcaagtcagtaatgaaactaagaacgtgtgtgtagaaagtgttgtgaaaagtga 12127676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 299
Target Start/End: Original strand, 3586353 - 3586441
Alignment:
Q  211 gaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    ||||||||| ||| |||||||||  |||| || ||||||   |||||||||||| ||||| |||| ||| |||||||| ||||||||||    
T  3586353 gaaaggtgcatgccggcacgttaggactccgacgctcaagtcagtaatggaactgagaaaaagtgagtagaaagtgttgtgaaaagtga 3586441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 299
Target Start/End: Original strand, 36267488 - 36267576
Alignment:
Q  211 gaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    ||||||||| |||| ||| ||||||||||  | ||||||   ||||||| |||| |||||||||||||| |||| ||| ||||||||||    
T  36267488 gaaaggtgcctgcatgcatgttaacactccaacgctcaagtcagtaatgaaactgagaaagagtgtgtagaaagggttgtgaaaagtga 36267576  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 208 - 297
Target Start/End: Complemental strand, 24576687 - 24576598
Alignment:
Q  208 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagt 297  Q
    |||||||||||| |||||||||||||||||||||| ||||||   |||||||||||||| || |||||||||  ||||||| ||||||||    
T  24576687 aacgaaaggtgcctgcaggcacgttaacactctgacgctcaagtcagtaatggaactaaaaatgagtgtgtaagaagtgttgtgaaaagt 24576598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 288
Target Start/End: Complemental strand, 3459586 - 3459508
Alignment:
Q  210 cgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgtt 288  Q
    |||||||||| ||||||||||||| ||||| |  ||||||   |||||||||||| || ||||||||||| ||||||||    
T  3459586 cgaaaggtgcctgcaggcacgttagcactccggcgctcaagtcagtaatggaactgagcaagagtgtgtagaaagtgtt 3459508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 6928149 - 6928103
Alignment:
Q  253 agtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||||||||| |||||||||||||| |||||||| ||||||||||    
T  6928149 agtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtga 6928103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 299
Target Start/End: Original strand, 13764977 - 13765067
Alignment:
Q  209 acgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    ||||||||||  |||||||||||||| ||||  ||| ||||   ||||||| |||| |||||||||||||| |||||||| || |||||||    
T  13764977 acgaaaggtgtctgcaggcacgttaagactccaatgttcaagtgagtaatgaaactgagaaagagtgtgtagaaagtgttgtgtaaagtga 13765067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 24070884 - 24070930
Alignment:
Q  253 agtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||    
T  24070884 agtaatggaactaagaaagagtgtgtagaaagtgttgtgagaagtga 24070930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 299
Target Start/End: Complemental strand, 26917002 - 26916911
Alignment:
Q  208 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||||||||| |  |||||||||| | | || | ||||||   |||||||||||| ||| |||||||||| |||||||| ||||||||||    
T  26917002 aacgaaaggtgcatttaggcacgttagcgcactaacgctcaagtcagtaatggaactgagagagagtgtgtagaaagtgttgtgaaaagtga 26916911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 17698344 - 17698298
Alignment:
Q  253 agtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||||||||  |||||||||||||| |||||||| ||||||||||    
T  17698344 agtaatggaaccgagaaagagtgtgtagaaagtgttgtgaaaagtga 17698298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 12683772 - 12683863
Alignment:
Q  208 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||||||||| ||||||||||||| |||||  | ||||||  |||||||| |||| |||||||||||||| |||||||| ||||||||||    
T  12683772 aacgaaaggtgcctgcaggcacgttagcactccaacgctcaagttagtaatgaaactgagaaagagtgtgtagaaagtgttgtgaaaagtga 12683863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 299
Target Start/End: Original strand, 47253268 - 47253355
Alignment:
Q  212 aaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    ||||||||||||||||| |||| |||||  | ||||||   |||||||||||| |||||||||||||| |||||||| ||||||||||    
T  47253268 aaaggtgcttgcaggcatgttagcactccaacgctcaagtcagtaatggaactgagaaagagtgtgtaaaaagtgttgtgaaaagtga 47253355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 299
Target Start/End: Complemental strand, 15742255 - 15742166
Alignment:
Q  210 cgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||||||| ||| ||||||||| |||||| | ||||||   |||||||||||| ||||| ||||||||  ||||||| ||||||||||    
T  15742255 cgaaaggtgcctgctggcacgttagcactcttacgctcaagtcagtaatggaactgagaaaaagtgtgtaagaagtgttgtgaaaagtga 15742166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 19809733 - 19809779
Alignment:
Q  253 agtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    ||||||| ||||||||||||||||||| |||||||| ||||||||||    
T  19809733 agtaatgaaactaagaaagagtgtgtagaaagtgttgtgaaaagtga 19809779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 29157089 - 29157180
Alignment:
Q  208 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||||||||| ||||| ||||||  |||||  | ||||||  ||||||||||||| ||||| ||||||||  ||||||| || |||||||    
T  29157089 aacgaaaggtgcatgcagacacgtttgcactccaacgctcaagttagtaatggaactgagaaaaagtgtgtagtaagtgttgtgtaaagtga 29157180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 279
Target Start/End: Complemental strand, 16012562 - 16012504
Alignment:
Q  221 tgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgta 279  Q
    ||||||||||||||||||| || ||||||   |||||||||||| ||| ||||||||||    
T  16012562 tgcaggcacgttaacactccgacgctcaagtcagtaatggaactgagatagagtgtgta 16012504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 19643734 - 19643780
Alignment:
Q  253 agtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||||||||| |||||||||||||| ||||| || ||||||||||    
T  19643734 agtaatggaactgagaaagagtgtgtagaaagtcttgtgaaaagtga 19643780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 276
Target Start/End: Original strand, 13171066 - 13171134
Alignment:
Q  208 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgt 276  Q
    |||||||||||||||||||||||||| |||||  |  |||||   |||||||||||| || ||||||||    
T  13171066 aacgaaaggtgcttgcaggcacgttagcactccaactctcaagtcagtaatggaactgagcaagagtgt 13171134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 205 - 299
Target Start/End: Original strand, 12516169 - 12516263
Alignment:
Q  205 tgaaacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    ||||||||||||||| ||||| ||||||| ||||| || ||||||  ||||||||||||| ||||||| ||||||  ||||||| ||||||||||    
T  12516169 tgaaacgaaaggtgcctgcagacacgttagcactccgacgctcaagttagtaatggaactgagaaagattgtgtaataagtgttgtgaaaagtga 12516263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 208 - 299
Target Start/End: Complemental strand, 14860203 - 14860112
Alignment:
Q  208 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||||||||||||||||||| ||| ||||||||| |||||   |||||||||||| ||||| ||| ||||  ||||||| ||||||||||    
T  14860203 aacgaaaggtgcttgcaggcacattagcactctgattctcaactcagtaatggaactgagaaacagtttgtaagaagtgttgtgaaaagtga 14860112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 299
Target Start/End: Complemental strand, 17143837 - 17143762
Alignment:
Q  224 aggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||||||| ||||| || ||||||   |||||||||||| |||||||||||||| |||||||| ||||||||||    
T  17143837 aggcacgttagcactccgacgctcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtga 17143762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 28715547 - 28715501
Alignment:
Q  253 agtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||    
T  28715547 agtaatggaactgagaaagagtgtgtataaagtgttgtgaaaagtga 28715501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 299
Target Start/End: Original strand, 1770815 - 1770903
Alignment:
Q  211 gaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    ||||||||  |||| ||| ||||  |||| || ||||||  ||||||||||||| || ||||||||||| |||||||| ||||||||||    
T  1770815 gaaaggtgtctgcaagcatgttagtactccgacgctcaagttagtaatggaactgaggaagagtgtgtagaaagtgttgtgaaaagtga 1770903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 299
Target Start/End: Complemental strand, 28723831 - 28723787
Alignment:
Q  255 taatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    ||||||||||||||||||||||||| ||| |||| ||||||||||    
T  28723831 taatggaactaagaaagagtgtgtagaaaatgttgtgaaaagtga 28723787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 34064182 - 34064273
Alignment:
Q  208 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||||||||  |||||||||||||||||| ||| | ||||   ||||||| |||||||||||||||||||  ||||||| ||||||||||    
T  34064182 aacgaaaggtgtgtgcaggcacgttaacactatgacgttcaagtcagtaatgaaactaagaaagagtgtgtaagaagtgttgtgaaaagtga 34064273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 300
Target Start/End: Original strand, 18147290 - 18147385
Alignment:
Q  205 tgaaacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtgac 300  Q
    ||||||||||||||| || ||| ||||||||||||  | ||||||   | |||||||||  |||||||||||||| |||||||| |||||||||||    
T  18147290 tgaaacgaaaggtgcctgtaggaacgttaacactccaacgctcaagtcactaatggaaccgagaaagagtgtgtagaaagtgttgtgaaaagtgac 18147385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 299
Target Start/End: Original strand, 14080472 - 14080561
Alignment:
Q  209 acgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    ||||||||||| | ||||||| ||| |||||||| ||||||  |||||||| |||| ||||||||||||||  ||||||| ||||||||||    
T  14080472 acgaaaggtgcctacaggcacattagcactctgacgctcaagttagtaatg-aactgagaaagagtgtgtagtaagtgttgtgaaaagtga 14080561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 299
Target Start/End: Complemental strand, 689958 - 689870
Alignment:
Q  211 gaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||||| ||||||| || ||| ||||   ||||||||   |||||||||||| |||||| |||||||||||||||| ||||||||||    
T  689958 gaaaggtgtttgcaggtacattagcactgcaatgctcaagtcagtaatggaactgagaaagtgtgtgtataaagtgttgtgaaaagtga 689870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 299
Target Start/End: Complemental strand, 31295639 - 31295548
Alignment:
Q  208 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||||| ||| |||||||| |||| ||||  || ||||||   ||||||| |||| ||||||||||||||| ||||||| ||||||||||    
T  31295639 aacgaaagttgcctgcaggcatgttagcacttcgacgctcaagtcagtaatgaaactgagaaagagtgtgtatgaagtgttgtgaaaagtga 31295548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 14268463 - 14268509
Alignment:
Q  253 agtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||||||||||||| | |||||||| |||||||||||||||||||    
T  14268463 agtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtga 14268509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 297
Target Start/End: Complemental strand, 19331784 - 19331695
Alignment:
Q  208 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagt 297  Q
    ||||||||||||||||||| ||||||  |||| || ||| ||   ||||||||||||||||||||| || || |||||||| || |||||    
T  19331784 aacgaaaggtgcttgcaggtacgttagtactccgacgcttaagtcagtaatggaactaagaaagagagtatagaaagtgttgtgtaaagt 19331695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 295
Target Start/End: Complemental strand, 3404921 - 3404879
Alignment:
Q  253 agtaatggaactaagaaagagtgtgtataaagtgttttgaaaa 295  Q
    |||||||||||| |||||||||||||| |||||||| ||||||    
T  3404921 agtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaa 3404879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 299
Target Start/End: Complemental strand, 12449686 - 12449596
Alignment:
Q  209 acgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    ||||||||||  || |||||||||| |||||||| ||||||   ||||||||| || | ||||||||||||  ||||||| || |||||||    
T  12449686 acgaaaggtgtctgtaggcacgttagcactctgacgctcaagtcagtaatggagctgaaaaagagtgtgtaagaagtgttgtggaaagtga 12449596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 17380129 - 17380175
Alignment:
Q  253 agtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  17380129 agtaatagaactgagaaagagtgtgaataaagtgttgtgaaaagtga 17380175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 19305496 - 19305542
Alignment:
Q  253 agtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||||||||| || ||||||||||| |||||||| ||||||||||    
T  19305496 agtaatggaactgagtaagagtgtgtagaaagtgttgtgaaaagtga 19305542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 298
Target Start/End: Complemental strand, 22497402 - 22497312
Alignment:
Q  208 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtg 298  Q
    |||||||||||||||||| ||||||| ||||| || ||||||   |||||||||||  | | |||| || || |||||||| |||||||||    
T  22497402 aacgaaaggtgcttgcagacacgttagcactccgacgctcaagtcagtaatggaacagaaagagagagtataaaaagtgttgtgaaaagtg 22497312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 287
Target Start/End: Complemental strand, 25008493 - 25008415
Alignment:
Q  209 acgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgt 287  Q
    ||||||||||| ||  |||||||||||||||  | ||||||   |||||||||| | |||||||||||||| |||||||    
T  25008493 acgaaaggtgcatgtcggcacgttaacactccaacgctcaagtcagtaatggaattgagaaagagtgtgtaaaaagtgt 25008415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 299
Target Start/End: Original strand, 5671761 - 5671848
Alignment:
Q  212 aaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    ||||||| ||| |||||||||| |||||  | ||||||  ||||||||||||| |||||||||||||| |||||||| ||||||||||    
T  5671761 aaaggtgtttgtaggcacgttagcactccaacgctcaagttagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtga 5671848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 12177373 - 12177464
Alignment:
Q  208 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||||||||| | || |||||||| ||||| ||  |||||   |||||||||||| |||||||||||||| |||||||| ||||||||||    
T  12177373 aacgaaaggtgcctacatgcacgttagcactccgacactcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtga 12177464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 22414762 - 22414853
Alignment:
Q  208 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    ||||||||||||  |||||||||||| |||||||| ||||||   ||||||| |||| | ||| |||||||| |||||||| ||||||||||    
T  22414762 aacgaaaggtgcccgcaggcacgttagcactctgacgctcaagtcagtaatgaaactgaaaaaaagtgtgtagaaagtgttgtgaaaagtga 22414853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 299
Target Start/End: Complemental strand, 33101608 - 33101520
Alignment:
Q  211 gaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    ||||||||| ||||||||||||| |||||  | ||||||    ||||||||||| ||||| |||||||| |||||||| ||||||||||    
T  33101608 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgtgtagaaagtgttgtgaaaagtga 33101520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 295
Target Start/End: Original strand, 26977727 - 26977814
Alignment:
Q  208 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaa 295  Q
    |||||||||||| ||||||||||||| |||||  | ||||||   |||||||||||  |||||||||||||| ||||| || ||||||    
T  26977727 aacgaaaggtgcctgcaggcacgttagcactccaacgctcaagtcagtaatggaaccgagaaagagtgtgtagaaagtattgtgaaaa 26977814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 300
Target Start/End: Original strand, 34273075 - 34273166
Alignment:
Q  209 acgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtgac 300  Q
    ||||||||| | |||| |||||||| |||||  ||||||||   ||||| |||||| |||||||||||||| |||||||| || ||||||||    
T  34273075 acgaaaggtacctgcaagcacgttagcactccaatgctcaagtcagtaacggaactgagaaagagtgtgtagaaagtgttgtgtaaagtgac 34273166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 52565567 - 52565658
Alignment:
Q  208 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||||||||| ||||| ||||||| |||||||| ||||||   ||||| |||||| | |||||||| | | |||||||| ||||||||||    
T  52565567 aacgaaaggtgcctgcagacacgttagcactctgacgctcaagtcagtaaaggaactgaaaaagagtgcgcagaaagtgttgtgaaaagtga 52565658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 299
Target Start/End: Original strand, 16030385 - 16030473
Alignment:
Q  211 gaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    ||||||||  ||||||||||||| || ||  ||||||||   |||||||||||| |  ||||||||||| |||||||| ||||||||||    
T  16030385 gaaaggtgtctgcaggcacgttatcagtcaaatgctcaagtcagtaatggaactgaataagagtgtgtagaaagtgttgtgaaaagtga 16030473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 299
Target Start/End: Complemental strand, 23728924 - 23728833
Alignment:
Q  208 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||||||||  ||||||||||||| || | ||| ||||||   | |||||||| | ||||||||||||||  ||||||| ||||||||||    
T  23728924 aacgaaaggtggatgcaggcacgttagcattatgacgctcaagtcattaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtga 23728833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 48637538 - 48637594
Alignment:
Q  208 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaact 264  Q
    |||||||||||| ||||||||||| | |||||||| ||||||   ||||||||||||    
T  48637538 aacgaaaggtgcctgcaggcacgtcagcactctgacgctcaagtcagtaatggaact 48637594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 303
Target Start/End: Original strand, 22874 - 22968
Alignment:
Q  209 acgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtgacgtg 303  Q
    ||||||||||| ||| ||||||||| |||||||| ||||||   |||||||||||| |||||  |||||||  ||||||| ||||||||||||||    
T  22874 acgaaaggtgcctgcgggcacgttagcactctgacgctcaagtcagtaatggaactgagaaatcgtgtgtaagaagtgttgtgaaaagtgacgtg 22968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 299
Target Start/End: Original strand, 7875 - 7963
Alignment:
Q  211 gaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    ||||||||| || |||||||||| |||||| | |||||||  ||||||| || | |||||||||||||| |||||||| ||||||||||    
T  7875 gaaaggtgcatgtaggcacgttagcactctaacgctcaaatcagtaatgcaattgagaaagagtgtgtagaaagtgttgtgaaaagtga 7963  T

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Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 121096 - 121024
Alignment:
Q  227 cacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||||  ||||||||||| ||   |||||||||||| ||||||||||||||||||||||| ||||||||||    
T  121096 cacgttagtactctgatgcttaagtcagtaatggaactgagaaagagtgtgtataaagtgttgtgaaaagtga 121024  T

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Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 379703 - 379794
Alignment:
Q  208 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||||||||| |  |||||||||| |||| |||  || ||   |||||||||||| ||||||||||||||  ||||||| ||||||||||    
T  379703 aacgaaaggtgcatctaggcacgttagcactttgacactgaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 379794  T

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Target: scaffold0140 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 299
Target Start/End: Original strand, 6289 - 6376
Alignment:
Q  212 aaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    ||||||| |||||||||||||| ||||  || ||||||   |||||||||||| ||||| |||||||| |||||||| ||||||||||    
T  6289 aaaggtgtttgcaggcacgttagcacttcgaagctcaagtcagtaatggaactgagaaatagtgtgtagaaagtgttgtgaaaagtga 6376  T

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Target: scaffold0074 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 295
Target Start/End: Original strand, 35240 - 35327
Alignment:
Q  208 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaa 295  Q
    ||||||| |||||||||||||||||| ||||||||  |||||   ||||| |||||| |||||||||||||  |||||||| ||||||    
T  35240 aacgaaatgtgcttgcaggcacgttagcactctgacactcaagtcagtaacggaactgagaaagagtgtgtggaaagtgttgtgaaaa 35327  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 299
Target Start/End: Complemental strand, 16987196 - 16987105
Alignment:
Q  208 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||||||||| ||| ||||||||| ||||||||  |||||   |||||||||| | ||||||||||||||  ||||||| ||||||||||    
T  16987196 aacgaaaggtgcatgcgggcacgttagcactctgacactcaagccagtaatggaattgagaaagagtgtgtaagaagtgttgtgaaaagtga 16987105  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 34854230 - 34854321
Alignment:
Q  208 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||| |||| |||||| ||||||| |||||||| ||||||  |||||||| |||| ||||||||||||||  || |||| ||||||||||    
T  34854230 aacgaacggtgtttgcagacacgttagcactctgacgctcaagttagtaatgaaactgagaaagagtgtgtaagaaatgttgtgaaaagtga 34854321  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 39879374 - 39879465
Alignment:
Q  208 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||||||||| ||||| |||||||||||| | | ||||||   ||||||| |||| |||||||||||||| |||||||| | ||||||||    
T  39879374 aacgaaaggtgcctgcagacacgttaacactttaacgctcaagtcagtaatgaaactgagaaagagtgtgtaaaaagtgttgtaaaaagtga 39879465  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 299
Target Start/End: Complemental strand, 9868042 - 9867952
Alignment:
Q  209 acgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    ||||||||||| |||||| |||||| |||||||| ||||||   |||||||||||| || |||||| |||| |||||||| | ||||||||    
T  9868042 acgaaaggtgcatgcaggaacgttagcactctgacgctcaagtcagtaatggaactgaggaagagtttgtagaaagtgttgttaaaagtga 9867952  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 299
Target Start/End: Original strand, 7486535 - 7486623
Alignment:
Q  211 gaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    ||||||||| ||||||||||||| |||||  | ||||||   |||||||||||| ||||||| |||||| || ||||| ||||||||||    
T  7486535 gaaaggtgcatgcaggcacgttagcactccaacgctcaattcagtaatggaactgagaaagattgtgtagaaggtgttgtgaaaagtga 7486623  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 12265192 - 12265152
Alignment:
Q  212 aaaggtgcttgcaggcacgttaacactctgatgctcaaagt 252  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  12265192 aaaggtgcatgcaggcacgttaacactctgatgctcaaagt 12265152  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 299
Target Start/End: Complemental strand, 9135465 - 9135374
Alignment:
Q  208 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||||||||| |  |||||||||| |||||| | ||||||   |||||||||| | |||||||||||||| ||| |||| ||||||||||    
T  9135465 aacgaaaggtgcatataggcacgttagcactctaacgctcaagtcagtaatggaattgagaaagagtgtgtaaaaactgttgtgaaaagtga 9135374  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 13159368 - 13159439
Alignment:
Q  216 gtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaaga-aagagtgtgtataaagtg 286  Q
    |||| |||||||||||||||||||  |||||||||  |||| ||||||||||| ||||||||||| ||||||    
T  13159368 gtgcctgcaggcacgttaacactccaatgctcaaatcagtattggaactaagagaagagtgtgtaaaaagtg 13159439  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 299
Target Start/End: Original strand, 21161241 - 21161319
Alignment:
Q  221 tgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    ||||||||||||| |||||  | ||||||   ||||||||| ||||||||| ||||||| |||||||| ||||||||||    
T  21161241 tgcaggcacgttagcactccaacgctcaagtcagtaatggagctaagaaagtgtgtgtagaaagtgttgtgaaaagtga 21161319  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 299
Target Start/End: Complemental strand, 26763013 - 26762924
Alignment:
Q  210 cgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||||| ||||||||||||||| |||||  | ||||||   ||||| |||||| | ||| |||||||| |||||||| ||||||||||    
T  26763013 cgaaaggttcttgcaggcacgttagcactccaacgctcaagtcagtaaaggaactcataaatagtgtgtagaaagtgttgtgaaaagtga 26762924  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 12644772 - 12644852
Alignment:
Q  208 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgtt 288  Q
    |||||||||||| |||||||| |||| ||||| || |||||    |||||||||||| ||||| |||||||  ||||||||    
T  12644772 aacgaaaggtgcatgcaggcaagttagcactccgacgctcaggtcagtaatggaactgagaaaaagtgtgtggaaagtgtt 12644852  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 299
Target Start/End: Complemental strand, 13292224 - 13292136
Alignment:
Q  211 gaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    ||||||||  |||||| |||||| |||||| | ||||||   ||||||| |||| | ||||||||||||  ||||||| ||||||||||    
T  13292224 gaaaggtgtctgcaggtacgttagcactctaacgctcaagtcagtaatgaaactgaaaaagagtgtgtaagaagtgttgtgaaaagtga 13292136  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 299
Target Start/End: Original strand, 16203768 - 16203800
Alignment:
Q  267 gaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||||||||||||||||||| ||||||||||    
T  16203768 gaaagagtgtgtataaagtgttatgaaaagtga 16203800  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 287
Target Start/End: Original strand, 8938899 - 8938978
Alignment:
Q  208 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgt 287  Q
    |||||||||||| |||||||||||||||||||  |||||| |   |||| ||||||| |||||||||||||| |||||||    
T  8938899 aacgaaaggtgcatgcaggcacgttaacactccaatgctctagtcagtattggaactgagaaagagtgtgtaaaaagtgt 8938978  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 22865748 - 22865839
Alignment:
Q  208 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||||||||| |||||| |||||| |||| ||| ||||||  ||||||||||||| ||||| ||||||||  || |||| ||||||||||    
T  22865748 aacgaaaggtgcatgcaggtacgttagcactttgacgctcaagttagtaatggaactgagaaaaagtgtgtaagaaatgttgtgaaaagtga 22865839  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 25537392 - 25537483
Alignment:
Q  208 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||||||||| |||| |||||||| |||||  | ||||||  | ||||||||||| ||||||| ||||||| ||||||| ||||||||||    
T  25537392 aacgaaaggtgcctgcaagcacgttagcactccaacgctcaagattgtaatggaactgagaaagattgtgtatgaagtgttgtgaaaagtga 25537483  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 22903125 - 22903171
Alignment:
Q  253 agtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||||||||| |||||||||||||| |||||||| ||||||||||    
T  22903125 agtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtga 22903171  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 299
Target Start/End: Complemental strand, 32418590 - 32418499
Alignment:
Q  208 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    ||||||||| || ||||||||||| |||||||||| ||||||   | | |||||||  |||||||||||||| | |||||| |||| |||||    
T  32418590 aacgaaaggagcctgcaggcacgtcaacactctgacgctcaagtcactgatggaacagagaaagagtgtgtagagagtgttgtgaagagtga 32418499  T

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Target: scaffold0023 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 299
Target Start/End: Complemental strand, 95910 - 95823
Alignment:
Q  212 aaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||| | ||||||||||||| ||||   | ||||||  ||||||||||||| |||||||||| ||| |||||||| ||||||||||    
T  95910 aaaggttcctgcaggcacgttaccacttcaacgctcaagttagtaatggaactgagaaagagtgcgtagaaagtgttgtgaaaagtga 95823  T

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Target: scaffold0263 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 299
Target Start/End: Complemental strand, 20601 - 20510
Alignment:
Q  208 aacgaaaggtgcttgcaggcacgttaacactctgatgctcaaagtagtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||||||||||| ||  || |||| |||||||| ||||||   | ||| |||||| |||||||||||||| ||| |||| ||||||||||    
T  20601 aacgaaaggtgcttacaaacatgttagcactctgacgctcaagtcactaaaggaactgagaaagagtgtgtagaaaatgttatgaaaagtga 20510  T

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Target: scaffold0294 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 302 - 256
Alignment:
Q  253 agtaatggaactaagaaagagtgtgtataaagtgttttgaaaagtga 299  Q
    |||||||||||| ||||||||||||||  ||||||| ||||||||||    
T  302 agtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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