View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16889_high_1 (Length: 301)
Name: NF16889_high_1
Description: NF16889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16889_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 14 - 284
Target Start/End: Original strand, 15526889 - 15527159
Alignment:
| Q |
14 |
catcaatggcgcaaaagacaaaatttcctagatgtagacaggttaacgctggtaaatcaagtgagttaggaaacaacgttctccaataattataacgacc |
113 |
Q |
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| T |
15526889 |
catcagtggcgcaaaagacaaaatttcctagatgtagacaggttaacactggtaaatctagtgagttaggaaacaacgttctccaataattataacgacc |
15526988 |
T |
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| Q |
114 |
tttaggcgaaacggatagcctaagtgatgttaacgtctgagacgaagaaatgcaaggtaggatatgacatatatcgcctttcacatcaatttctaatcga |
213 |
Q |
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| T |
15526989 |
tttaggcgaaacggatagcctaagtgatgttaacgtctgagacgaagaaatgcaaggtaggatatgacatatatcgcctttcacatcaatttctaatcga |
15527088 |
T |
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| Q |
214 |
tcgagcttggcactgtgcgataaaacataatttgctacttttttaagtaggccaaactcaatactaccact |
284 |
Q |
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| T |
15527089 |
tcgagcttggcactgtgcgataaaacataatttgctacttttttaagtaggccaaactcaatactaccact |
15527159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 194
Target Start/End: Original strand, 36591031 - 36591200
Alignment:
| Q |
25 |
caaaagacaaaatttcctagatgtagacaggttaacgctggtaaatcaagtgagttaggaaacaacgttctccaataattataacgacctttaggcgaaa |
124 |
Q |
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| T |
36591031 |
caaaagacgaaattccctagatgcaaactggttaacgctggcaaatccaatgattttggaaacaacgttctcccataattatgcctccctttgggcgaaa |
36591130 |
T |
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| Q |
125 |
cggatagcctaagtgatgttaacgtctgagacgaagaaatgcaaggtaggatatgacatatatcgccttt |
194 |
Q |
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| T |
36591131 |
cagaaagcttaagagacgttaaagtccgacacgaagaaacacaaggcagaatatgacaaatatccccttt |
36591200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 15581944 - 15582015
Alignment:
| Q |
174 |
gatatgacatatatcgcctttcacatcaatttctaatcgatcgagcttggcactgtgcgataaaacataatt |
245 |
Q |
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| T |
15581944 |
gatatgacatatatcgcctttaacatcaaatcctagtcgattgagttgggcattgtgagataaaacataatt |
15582015 |
T |
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