View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1688_low_1 (Length: 632)
Name: NF1688_low_1
Description: NF1688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1688_low_1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 585; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 11 - 632
Target Start/End: Complemental strand, 47117508 - 47116891
Alignment:
| Q |
11 |
cataggtgaacgaggtctcattggtggaggttgttcttgagtactcttaactgtctaatagaatgcaacaacatcatcgaattggatgaatgaacattca |
110 |
Q |
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| T |
47117508 |
cataggtgaacgaggtctcattggtggaggttgttcttgagtactcttaactgtctaatagaatgcaacaacatcatcgaattggatgaatgaacattca |
47117409 |
T |
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| Q |
111 |
acaacatatcaatataaatacaagtaagaaaggaataatagctaccacaggggagcgaggccgcgctgctcttccaccaccaagtccgatgcttctagtg |
210 |
Q |
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| T |
47117408 |
acaacatatcaatataaatacaagtaagaaagaaataatagctaccacaggggagcgaggccgcgctgctcttccaccaccaagtccgatgcttctagtg |
47117309 |
T |
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| Q |
211 |
ccactaattgcagaatagtcaagaggaacatcgtcatcgtcttcttcttcatcaattgtttgatgcgacataacttgtgcgagtcgttgagcagcggctt |
310 |
Q |
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| T |
47117308 |
ccactaattgcagaatagtcaagaggaacatcgtcatcgtcttcttcttcatcaattgtttgatgcgacataacttgtgcaagtcgttgagcagcggctt |
47117209 |
T |
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| Q |
311 |
ttgtggcattgttttgtgttctcccgatgttgttcatggcagaacctgtggaacctgcacgagcatgtcggttcaatggcgacatcatcaccggcgaaga |
410 |
Q |
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| T |
47117208 |
ttgtggcattgttttgtgttctcccgatgttgttcatggcagaacctgtggaacctgcacgagcatgtcgattcaatggcgacatcatcaccggtgaaga |
47117109 |
T |
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| Q |
411 |
tggtgatgttggcgttcccgttgagctttgttgcctatcatacattctccgcctatccatctacaaaacaagaaattaaaaataatcgttaaaaggtgat |
510 |
Q |
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| T |
47117108 |
cggtgatgttggcgttcccgttgagctttgttgcctatcatacattctccgcctatccatctacaaaacaagaaattaaaaataatcgttaaaaggtga- |
47117010 |
T |
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| Q |
511 |
cgatcgagtcattgatacgttgatattgcttaccttgctttgtgatttgatcgttaaaaggtatgaatatttatctccttgaattgaaactaaagatata |
610 |
Q |
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| T |
47117009 |
---tcgagtcattgatacgttgatattgcttaccttgctttgtgatttgatcgttaaaaggtatgaatatttatctccttgaattgaaactaaagatata |
47116913 |
T |
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| Q |
611 |
aaagaaattggttattgaatat |
632 |
Q |
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| T |
47116912 |
aaagaaattggttattgaatat |
47116891 |
T |
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