View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1688_low_10 (Length: 253)
Name: NF1688_low_10
Description: NF1688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1688_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 24 - 238
Target Start/End: Original strand, 43657640 - 43657854
Alignment:
| Q |
24 |
cgaaagtctcgataatgctaggcttgtgtacaaaaaatggagttccttaattaccattgctaaagtccttcaaaagaaaaaagaatatagatatcaaaat |
123 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43657640 |
cgaaagtctcgataatgctaggcttgtgtgcaaaaaatggagttccttgattaccattgctaaagtccttcaaaagaaaaaagaatatagatatcaaaat |
43657739 |
T |
|
| Q |
124 |
ctatggttttttgtctttggtacctgcttgtaatttcattcacaatcctgcctgctcatacagtgatgttaacataatacatgcacttcatatatctcgc |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43657740 |
ctatggttttttgtctttggtacctgcttgtaattgcactcacaatcctgcctgctcatacagtgatgttaacataatacatgcacttcatatatctcgc |
43657839 |
T |
|
| Q |
224 |
aatcaatggcataat |
238 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
43657840 |
aatcaatggcataat |
43657854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 10371080 - 10371120
Alignment:
| Q |
37 |
aatgctaggcttgtgtacaaaaaatggagttccttaattac |
77 |
Q |
| |
|
||||||||||| |||| |||| ||||||||||||||||||| |
|
|
| T |
10371080 |
aatgctaggctcgtgttcaaataatggagttccttaattac |
10371120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University