View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1688_low_13 (Length: 243)

Name: NF1688_low_13
Description: NF1688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1688_low_13
NF1688_low_13
[»] chr6 (2 HSPs)
chr6 (18-243)||(9337405-9337630)
chr6 (18-156)||(17379913-17380051)
[»] chr7 (3 HSPs)
chr7 (18-192)||(10940200-10940373)
chr7 (18-176)||(11351788-11351947)
chr7 (18-74)||(30252626-30252682)
[»] chr3 (3 HSPs)
chr3 (17-194)||(24508325-24508500)
chr3 (18-192)||(16976719-16976895)
chr3 (17-192)||(1342934-1343106)
[»] chr2 (1 HSPs)
chr2 (28-192)||(29841650-29841812)
[»] chr4 (2 HSPs)
chr4 (18-184)||(11553737-11553896)
chr4 (17-192)||(15783384-15783557)
[»] chr5 (2 HSPs)
chr5 (18-155)||(18958944-18959079)
chr5 (17-95)||(25916509-25916587)


Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 9337630 - 9337405
Alignment:
Q  18 ttgtaaatcgtattagtgcatagtcttaacaatttgtcatagtttgtgattgttcaaagcatatttccaataagtcaatatcttttcaaaacgctttcgc 117  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9337630 ttgtaaatcttattagtgcatagtcttaacaatttgtcatagtttgtgattgttcaaagcatattttcaataagtcaatatcttttcaaaacgctttcgc 9337531  T
Q  118 caaaactccgcaactttgttcaatcgctattcacccccctttagcgcgcgtccttattggccatatagagcaacaccgcgtactgtcggaccctattcct 217  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9337530 caaaactccgcaactttgttaaatcgctattcacccccctctagcgcgcgtccttattggccatatagagcaacaccgcgtactgtcggaccctattcct 9337431  T
Q  218 ttggtcctactggaaccattaagcaa 243  Q
    ||||||||||||||||||||||||||    
T  9337430 ttggtcctactggaaccattaagcaa 9337405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 17379913 - 17380051
Alignment:
Q  18 ttgtaaatcgtattagtgcatagtcttaacaatttgtcatagtttgtgattgttcaaagcatatttccaataagtcaatatcttttcaaaacgctttcgc 117  Q
    ||||||||| |||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  17379913 ttgtaaatcttattagtgcatactctgaacaatttgtcatagtttgcgattgttcaaagcatatttccaataagtcaatatcttttcaaaaaactttcgc 17380012  T
Q  118 caaaactccgcaactttgttcaatcgctattcacccccc 156  Q
     |||||||| ||||||| || || || |||||| |||||    
T  17380013 taaaactcctcaacttttttaaagcgttattcatccccc 17380051  T

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Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 10940200 - 10940373
Alignment:
Q  18 ttgtaaatcgtattagtgcatagtcttaacaatttgtcatagtttgtgattgttcaaagcatatttccaataagtcaatatcttttcaaaacgctttcgc 117  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||| |||||||    
T  10940200 ttgtaaatcttattagtgcatagtcttaacaatttgtcatagtttgtgattgttcaaaacatatttccaataagttaatatc-tttcaaaacactttcgc 10940298  T
Q  118 caaaactccgcaactttgttcaatcgctattcacccccctttagcgcgcgtccttattggccatatagagcaaca 192  Q
    |||||||||| ||| || || ||||||||||||||||| |||||| | | ||||||||| ||||||||| |||||    
T  10940299 caaaactccgtaacatttttaaatcgctattcacccccttttagcacacatccttattgaccatatagaccaaca 10940373  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 11351947 - 11351788
Alignment:
Q  18 ttgtaaatcgtattagtgcatagtcttaacaatttgtcatagtttgtgattgttc--aaagcatatttccaataagtcaatatcttttcaaaacgctttc 115  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||  |||  | || | ||| |||||||||   |||||||||||||||    
T  11351947 ttgtaaatcttattagtgcatagtcttaacaatttgtcataatttgtgattgatcaaaaaaaaaatattcaacaagtcaata--atttcaaaacgctttc 11351850  T
Q  116 gccaaaactccgcaac-tttgttcaatcgctattcacccccctttagcgcgcgtccttattg 176  Q
    |||||||||| ||||| ||| |  ||| |||||||||| |||| |||||||| |||||||||    
T  11351849 gccaaaactctgcaacttttctaaaattgctattcacctccctctagcgcgcatccttattg 11351788  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 30252682 - 30252626
Alignment:
Q  18 ttgtaaatcgtattagtgcatagtcttaacaatttgtcatagtttgtgattgttcaa 74  Q
    ||||||||| |||||| ||||| |||||| |||||||||||||||| ||||||||||    
T  30252682 ttgtaaatcttattagagcatattcttaagaatttgtcatagtttgcgattgttcaa 30252626  T

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Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 24508325 - 24508500
Alignment:
Q  17 attgtaaatcgtattagtgcatagtcttaacaatttgtcatagtttgtgattgttcaaagcatatttccaataagtcaatatcttttcaaaacgctttcg 116  Q
    |||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  24508325 attgcaaatcttattagtgcatggtcttaacaatttgtcaaagtttgtgattgttcaaagcatatttctaataagtcaatatc-tttcaaaacgctttcg 24508423  T
Q  117 ccaaaactccgcaactttgttcaatcgctattcacccccctttagcgcgcgtccttattggccatatagagcaacacc 194  Q
    ||||||||||| ||  || || |||||||||||| |||||| |||||||| || |||||||||||||||| |||||||    
T  24508424 ccaaaactccgtaaactttttaaatcgctattca-ccccctctagcgcgcatctttattggccatatagaccaacacc 24508500  T

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Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 16976719 - 16976895
Alignment:
Q  18 ttgtaaatcgtattagtgcatagtcttaacaatttgtcatagtttgtgattgttcaaagcatatttccaataagtcaatatcttttcaaaacgctttcgc 117  Q
    ||||||||| |||||| |||||||||||  ||||||| | ||||||||||||||||||||| ||||||||||| ||| ||| ||||||||||||||||||    
T  16976719 ttgtaaatcttattagagcatagtcttagaaatttgttacagtttgtgattgttcaaagcaaatttccaataactcagtatattttcaaaacgctttcgc 16976818  T
Q  118 caaaactccgcaa-ctttgttcaatcgctattca-cccccctttagcgcgcgtccttattggccatatagagcaaca 192  Q
    ||||||||||||| |||| || |||||||||||| ||||||| |||||||| ||||||||||||||||||| |||||    
T  16976819 caaaactccgcaaccttttttaaatcgctattcaccccccctctagcgcgcatccttattggccatatagaccaaca 16976895  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 1343106 - 1342934
Alignment:
Q  17 attgtaaatcgtattagtgcatagtcttaacaatttgtcatagtttgtgattgttcaaagcatatttccaataagtcaatatcttttcaaaacgctttcg 116  Q
    |||||||||| ||||||| |||| | |||||  ||| | || |||||||||||||||| || ||||| |||| |||||| | | ||||||||| ||||||    
T  1343106 attgtaaatcttattagtacataatattaactttttttgattgtttgtgattgttcaa-gcttattttcaattagtcaaaa-catttcaaaacactttcg 1343009  T
Q  117 ccaaaactccgcaactttgttcaatcgctattcacccccctttagcgcgcgtccttattggccatatagagcaaca 192  Q
    || |||||||| || ||| || || |||||||||| ||||| || |||||  |||||||||||||||||| |||||    
T  1343008 ccgaaactccgtaaattttttaaaccgctattcac-cccctctaacgcgcaaccttattggccatatagaccaaca 1342934  T

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Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 28 - 192
Target Start/End: Complemental strand, 29841812 - 29841650
Alignment:
Q  28 tattagtgcatagtcttaacaatttgtcatagtttgtgattgttcaaagcatatttccaataagtcaatatcttttcaaaacgctttcgccaaaactccg 127  Q
    ||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||  || | ||||    
T  29841812 tattagtgcatagtcttaacattttgtcgtagtttttgattgttcaaagcatatttccaataagtctaaatcttttcaaaacgctttcg--aatagtccg 29841715  T
Q  128 caactttgttcaatcgctattcacccccctttagcgcgcgtccttattggccatatagagcaaca 192  Q
    ||| ||| |  || |||||||||||||| ||||||| || |||||||||||||||| || |||||    
T  29841714 caaatttttaaaagcgctattcacccccatttagcgtgcatccttattggccatatcgaccaaca 29841650  T

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Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 11553896 - 11553737
Alignment:
Q  18 ttgtaaatcgtattagtgcatagtcttaacaatttgtcatagtttgtgattgttcaaagcatatttccaataagtcaatatcttttcaaaacgctttcgc 117  Q
    ||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |    
T  11553896 ttgtaaatcttactaatgcatagttttaacaatttgtcatagtttgtgattgttcaaagcataattccaataagtcaatatcttttcaaaatgctttcac 11553797  T
Q  118 caaaactccgcaactttgttcaatcgctattcacccccctttagcgcgcgtccttattggccatata 184  Q
    ||||||      ||||| || ||| |||||||| |||||| ||| |||| |||||||||||||||||    
T  11553796 caaaac------acttttttaaattgctattca-ccccctctagagcgcatccttattggccatata 11553737  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 15783384 - 15783557
Alignment:
Q  17 attgtaaatcgtattagtgcatagtcttaacaatttgtcatagtttgtgattgttcaaagcatatttccaataagtcaatatcttttcaaaacgctttcg 116  Q
    |||||||||| ||||||  ||||||||||||  ||||| || |||||||||||||| |||| | ||| |||| |||||| | | ||||||| ||||||||    
T  15783384 attgtaaatcttattagcacatagtcttaactttttgtaattgtttgtgattgttc-aagcttcttttcaattagtcaa-aacatttcaaatcgctttcg 15783481  T
Q  117 ccaaaactccg-caactttgttcaatcgctattcacccccctttagcgcgcgtccttattggccatatagagcaaca 192  Q
    | |||| ||||  ||  |  || || ||||||||| |||||| ||||||||  ||| |||||||||||||| |||||    
T  15783482 ctaaaattccgtaaaaataattaaaccgctattca-ccccctctagcgcgcaacctaattggccatatagaccaaca 15783557  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 18958944 - 18959079
Alignment:
Q  18 ttgtaaatcgtattagtgcatagtcttaacaatttgtcatagtttgtgattgttcaaagcatatttccaataagtcaatatcttttcaaaacgctttcgc 117  Q
    |||| |||| ||||||| |||||||||| | |||||||||| ||||||||||||| |||||  ||| |||||| |||| ||  |||||||||||||| ||    
T  18958944 ttgtgaatcctattagtacatagtcttagcgatttgtcatactttgtgattgttc-aagcaagttttcaataattcaaaat-atttcaaaacgcttttgc 18959041  T
Q  118 caaaactccgcaactttgttcaatc-gctattcaccccc 155  Q
    |||||||||| || ||| ||||| | |||||||||||||    
T  18959042 caaaactccgtaaattt-ttcaaactgctattcaccccc 18959079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 25916587 - 25916509
Alignment:
Q  17 attgtaaatcgtattagtgcatagtcttaacaatttgtcatagtttgtgattgttcaaagcatatttccaataagtcaa 95  Q
    |||||||||| | ||||| ||||||||||||  ||||| || |||| ||| ||||||||||||| ||||||| ||||||    
T  25916587 attgtaaatctttttagtacatagtcttaactttttgtgattgtttatgagtgttcaaagcataattccaattagtcaa 25916509  T

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