View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1688_low_2 (Length: 570)
Name: NF1688_low_2
Description: NF1688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1688_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 281 - 558
Target Start/End: Original strand, 3777657 - 3777934
Alignment:
| Q |
281 |
agatcttccattctttgtcgaatctcacttcgttcttcacccatcattagatctctaatcaccttagcaatttcatctctttcagctatgccattctcat |
380 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3777657 |
agatcttcaattctttgtcgaatctcacttcgttcttcacctatcattagatctctaatcaccttagcaatttcatctctttcagctatgccaatctcat |
3777756 |
T |
|
| Q |
381 |
taaatcttaccttcaaaccaactccgagtccctctagcaaaatagcattcattctttgttcggaaaacaatggccaagttatcactggcactccgaacac |
480 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||| |
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| T |
3777757 |
taaatcttaccttcaaaccaactccgagtccctctaacaacatagcattcattctttgctctgaaaacaatggccaagttatcattggcactccgaacac |
3777856 |
T |
|
| Q |
481 |
aagactctcaagtgtctaattccaaccacaatgtgttaaaaatccaccggttgaagcgtggcttacgatttgagtctg |
558 |
Q |
| |
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||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
3777857 |
aagactctccagtgtcgaattccaaccacaatgtgttaaaaatccaccggttgaaatgtggcttaggatttgagtctg |
3777934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 284 - 536
Target Start/End: Complemental strand, 3701438 - 3701183
Alignment:
| Q |
284 |
tcttccattctttgtcgaatctcacttcgttcttcacccatcattagatctctaatcaccttagcaatttcatctctttcagctatgccattctcattaa |
383 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| || | |||||||||| ||| ||||||||||||||| ||||||| || |||||||||||||||| |
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| T |
3701438 |
tcttcaattctttgtcgaatctcacttcgttcttctccgagcattagatctttaaccaccttagcaatttccactctttctgcaatgccattctcattaa |
3701339 |
T |
|
| Q |
384 |
atcttaccttcaaaccaactccgagtccctct---agcaaaatagcattcattctttgttcggaaaacaatggccaagttatcactggcactccgaacac |
480 |
Q |
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|| | | ||||||||| ||| |||||||||| | ||||| ||||||||||||||| ||| ||| |||||||| ||||||| ||||||||| ||||| |
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| T |
3701338 |
atttgatcttcaaacccactttgagtccctctgtcaacaaaacagcattcattctttgctcgccaaataatggccatgttatcattggcactcctaacac |
3701239 |
T |
|
| Q |
481 |
aagactctcaagtgtctaattccaaccacaatgtgttaaaaatccaccggttgaag |
536 |
Q |
| |
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| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3701238 |
gatactctcaagtgtcgaattccaaccacaatgtgttaaaaatccaccggttgaag |
3701183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 284 - 535
Target Start/End: Complemental strand, 3708205 - 3707951
Alignment:
| Q |
284 |
tcttccattctttgtcgaatctcacttcgttcttcacccatcattagatctctaatcaccttagcaatttcatctctttcagctatgccattctcattaa |
383 |
Q |
| |
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||||| |||||||||||||||||||| |||||||| || | |||||||| ||||| ||||||||||||||| |||||||| || |||||||||||||||| |
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| T |
3708205 |
tcttcaattctttgtcgaatctcactccgttcttctccgagcattagatgtctaaccaccttagcaatttcctctctttctgcaatgccattctcattaa |
3708106 |
T |
|
| Q |
384 |
atcttaccttcaaaccaactccgagtccctctagca---aaatagcattcattctttgttcggaaaacaatggccaagttatcactggcactccgaacac |
480 |
Q |
| |
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|| ||| ||||||||| ||| |||||||||| | |||||||||||||| |||| || |||||||||||||||||||| |||||||||| |||| |
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| T |
3708105 |
attttatcttcaaacccactttaagtccctctactattaaaatagcattcattatttgatcaccaaacaatggccaagttatcattggcactccggacac |
3708006 |
T |
|
| Q |
481 |
aagactctcaagtgtctaattccaaccacaatgtgttaaaaatccaccggttgaa |
535 |
Q |
| |
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|| ||||||||| ||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
3708005 |
aatactctcaagcgtcgaattccaaccacaatgtgttaaaaatccacctgttgaa |
3707951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 284 - 536
Target Start/End: Complemental strand, 3719714 - 3719459
Alignment:
| Q |
284 |
tcttccattctttgtcgaatctcacttcgttcttcacccatcattagatctctaatcaccttagcaatttcatctctttcagctatgccattctcattaa |
383 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||| || | ||||||||| ||| ||||||||||||||| |||||||| || || ||||||||||||| |
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| T |
3719714 |
tcttccattctttgtcgaatctcactccgtttttctccgagcattagatccttaaccaccttagcaatttcctctctttctgcaattccattctcattaa |
3719615 |
T |
|
| Q |
384 |
atcttaccttcaaaccaactccgagtccctctagca---aaatagcattcattctttgttcggaaaacaatggccaagttatcactggcactccgaacac |
480 |
Q |
| |
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|| ||| ||||||||| ||| |||||||||| | ||||||||||||||||||| || |||||||||||||||||||| |||||||||| |||| |
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| T |
3719614 |
attttatcttcaaacccactttaagtccctctactattaaaatagcattcattctttgatcaccaaacaatggccaagttatcattggcactccggacac |
3719515 |
T |
|
| Q |
481 |
aagactctcaagtgtctaattccaaccacaatgtgttaaaaatccaccggttgaag |
536 |
Q |
| |
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|| ||||||||| ||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
3719514 |
aatactctcaagcgtcgaattccaaccacaatgtgttaaaaatccacctgttgaag |
3719459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 284 - 535
Target Start/End: Original strand, 3769990 - 3770244
Alignment:
| Q |
284 |
tcttccattctttgtcgaatctcacttcgttcttcacccatcattagatctctaatcaccttagcaatttcatctctttcagctatgccattctcattaa |
383 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| || | |||||||||| ||| ||||||||||||||| |||||||| || ||| |||||||||||| |
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|
| T |
3769990 |
tcttcaattctttgtcgaatctcactccgttcttctccgagcattagatctttaaccaccttagcaatttcctctctttctgcaatgtcattctcattaa |
3770089 |
T |
|
| Q |
384 |
atcttaccttcaaaccaactccgagtccctctagca---aaatagcattcattctttgttcggaaaacaatggccaagttatcactggcactccgaacac |
480 |
Q |
| |
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|| ||| ||||||||| ||| |||||||||| | ||||||||||||||||||| || ||||||||||||||||| || ||||||||| |||| |
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| T |
3770090 |
attttatcttcaaacccactttaagtccctctactattaaaatagcattcattctttgatcaccaaacaatggccaagttaccattggcactcccgacac |
3770189 |
T |
|
| Q |
481 |
aagactctcaagtgtctaattccaaccacaatgtgttaaaaatccaccggttgaa |
535 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
3770190 |
aatactctcaagtgttgaattccaaccacaatgtgttaaaaatccacctgttgaa |
3770244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 284 - 560
Target Start/End: Original strand, 33004902 - 33005181
Alignment:
| Q |
284 |
tcttccattctttgtcgaatctcacttcgttcttcacccatcattagatctctaatcaccttagcaatttcatc-tctttcagctatgccattctcatta |
382 |
Q |
| |
|
||||| ||||||||| ||| ||||| | ||||||||| | ||||| |||||||||||||||||||||||| || |||||| || |||||| |||||||| |
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| T |
33004902 |
tcttcaattctttgttcaatttcactcctttcttcaccaagcattaaatctctaatcaccttagcaatttcctcctctttctgcaatgccactctcatta |
33005001 |
T |
|
| Q |
383 |
aatcttaccttcaaaccaactccgagtccctctag---caaaatagcattcattctttgttcggaaaacaatggccaagttatcactggcactccgaaca |
479 |
Q |
| |
|
| | ||||||||||||| || ||||||||||| |||||||||||||| |||||| ||| |||||| ||||||||||||| ||||||||| || |
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| T |
33005002 |
att-ttaccttcaaacccaccttgagtccctctattaacaaaatagcattcaatctttgctcgccaaacaacggccaagttatcattggcactcccgacg |
33005100 |
T |
|
| Q |
480 |
caagactctcaagtgtctaattccaaccacaatgtgttaaaaatccaccggttgaagcgtggcttacgatttgagtctgtg |
560 |
Q |
| |
|
||| ||||| ||||| ||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||| |
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|
| T |
33005101 |
caatgctctcgagtgttgaattccaaccacaatgtgttaaaaatccaccagttgaagtgtggcttaggatttgagtctgtg |
33005181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 3769623 - 3769760
Alignment:
| Q |
18 |
aaaatgtagtttcacatacatcata---ttcagtttcatatcaaactaatgttattgtacaattttataacaatgataatgaaacaaatcaacttgaagt |
114 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||| ||||||||||| |
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| T |
3769623 |
aaaatgtagtttcacatacatcataatattcaatttcatatcaaactaatgttattgtacaattttataataattataataaaacaaaccaacttgaagt |
3769722 |
T |
|
| Q |
115 |
atcattctcgtacaacacccacatttaggaagaaaaaa |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3769723 |
atcattctcgtacaacacccacatttaggaagaaaaaa |
3769760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 90 - 181
Target Start/End: Original strand, 3777442 - 3777536
Alignment:
| Q |
90 |
ataatgaaacaaatcaacttgaagtatcattctcgtacaacacccacatttaggaagaaaaaa---gtattaaacacattgaaataaactcacag |
181 |
Q |
| |
|
||||| ||||||| |||||| |||||||||| | || ||||| | ||||| |||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
3777442 |
ataataaaacaaaccaacttcaagtatcattgtggtgcaacatcaacattaaggaagaaaaaaaatgtaataaacacattgaaataaactcacag |
3777536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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