View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1688_low_3 (Length: 472)
Name: NF1688_low_3
Description: NF1688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1688_low_3 |
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| [»] scaffold0374 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 385
Target Start/End: Complemental strand, 45191714 - 45191346
Alignment:
| Q |
17 |
ataatacctcaaagaggactacaccaaatgagtatatatccgatttttgagtcaattgttggctcctataatattcaggatctaggtatccaaaacttcc |
116 |
Q |
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| T |
45191714 |
ataatacctcaaagaggactacaccaaatgagtatatatccgatttttgagtcagttgttggctcctataatattcaggatctaggtatccaaaacttcc |
45191615 |
T |
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| Q |
117 |
cttaacagcggtgcttatttgagatttatcttggatagctttagataaaccaaaatcagaaaccttggcaacataattctcatccaagagtatattggtt |
216 |
Q |
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| T |
45191614 |
cttaacagcagtgcttatttgagatttatcttgtatagctttagataaaccaaaatcagaaaccttggcaacataattctcatccaagagtatatttgtt |
45191515 |
T |
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| Q |
217 |
gtcttcacgtcacggtgtatgatactttgagatgcacctatattagatatataaatttagttagagtccattcgtaggcaattagtttgttaattatcta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45191514 |
gtcttcacgtcacggtgtatgatactttgagatgcacctatattagatatataaatttagttagagtccattcgtaggcaattagtttgttaattatcta |
45191415 |
T |
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| Q |
317 |
ctcactctactcgctccatatatagagcatctcatgtattcatcaacaatcttttatcaatcaatatga |
385 |
Q |
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| T |
45191414 |
ctctctctactcactccatatatagagcatctcatgtattcatcaacaatcttttatcaatcaatatga |
45191346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 4652572 - 4652653
Alignment:
| Q |
155 |
ctttagataaaccaaaatcagaaaccttggcaacataattctcatccaagagtatattggttgtcttcacgtcacggtgtat |
236 |
Q |
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| T |
4652572 |
ctttcgataatccaaaatcagaaaccttagccacccatttctcatccaacaatatgttggtgctcttcacgtcacggtgtat |
4652653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 240
Target Start/End: Complemental strand, 4713130 - 4713045
Alignment:
| Q |
155 |
ctttagataaaccaaaatcagaaaccttggcaacataattctcatccaagagtatattggttgtcttcacgtcacggtgtatgata |
240 |
Q |
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| T |
4713130 |
cttttgataaaccgaaatcagaaaccttagccacccatttttcatccaacaatatatttgtactcttaacgtcacggtgtatgata |
4713045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 240
Target Start/End: Complemental strand, 4784899 - 4784814
Alignment:
| Q |
155 |
ctttagataaaccaaaatcagaaaccttggcaacataattctcatccaagagtatattggttgtcttcacgtcacggtgtatgata |
240 |
Q |
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| T |
4784899 |
cttttgataacccaaaatcagaaaccttagccacccatttttcatccaacaatatgtttgtactcttcacgtcacggtgtatgata |
4784814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0374 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0374
Description:
Target: scaffold0374; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 395
Target Start/End: Complemental strand, 14234 - 14176
Alignment:
| Q |
337 |
tatagagcatctcatgtattcatcaacaatcttttatcaatcaatatgaaatctaaaga |
395 |
Q |
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| T |
14234 |
tatagagcatctcatgtattcatctgcaacatttaatcaatcaatatgaattcaaaaga |
14176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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