View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1688_low_4 (Length: 393)
Name: NF1688_low_4
Description: NF1688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1688_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 27384375 - 27384237
Alignment:
| Q |
10 |
ggtgtttgagggtatttgaagcaagcaacatggaggcatcatttgaccttaaacaaacatatccttgtcacctatgggcaataaattcttcccacgaggc |
109 |
Q |
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| T |
27384375 |
ggtgtttgagggtatttgaagcaagcaacgtggaggcatcatttgaccttaaacaaacatatccttgtcacctatgggcaataaattcttcccacgaggc |
27384276 |
T |
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| Q |
110 |
atcaatgtgtcctgatctacactcttaatttttgagtaag |
149 |
Q |
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| T |
27384275 |
atcaatgtgttctgatctacact-ttaaattttgagtaag |
27384237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 10 - 157
Target Start/End: Complemental strand, 27390865 - 27390719
Alignment:
| Q |
10 |
ggtgtttgagggtatttgaagcaagcaacatggaggcatcatttgaccttaaacaaacatatccttgtcacctatgggcaataaattcttcccacgaggc |
109 |
Q |
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| T |
27390865 |
ggtgtttgagggtatttgaagcaagcaacgtggaggcatcatttggcct-aaaccaacatatccttgtcacctatgggcaataaattcttcccacgaggc |
27390767 |
T |
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| Q |
110 |
atcaatgtgtcctgatctacactcttaatttttgagtaaggtacatac |
157 |
Q |
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| T |
27390766 |
atcaatgtgttctgatctacactcttaatttttgagtaagttacatac |
27390719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 246 - 374
Target Start/End: Complemental strand, 27384130 - 27384002
Alignment:
| Q |
246 |
tattttaaattcttgtagtattccatacaaaagaaattattgtactcgtgctataatatcgtttttaaagagttgctagcgtgacgtagctcaatccata |
345 |
Q |
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| T |
27384130 |
tattataaattcttgtagtatcccatacaaaagaaattattgtacccgtgctataatatcgtttttaaagagttgctagcgtgacgtagctcaacccata |
27384031 |
T |
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| Q |
346 |
caaaaataggaatgtgttgttgtcgatta |
374 |
Q |
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| T |
27384030 |
taaaaataggaatgtgttgttatcgatta |
27384002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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