View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1688_low_5 (Length: 364)
Name: NF1688_low_5
Description: NF1688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1688_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 27 - 353
Target Start/End: Original strand, 8043469 - 8043795
Alignment:
| Q |
27 |
ttataagcacatgtttaatatttgctccatatgttacagatatgtgttgttctcggggtatgtataatggttctagcacccattggagcattgaggagta |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8043469 |
ttataagcacatgtttaatatttgctccatatgttacagatatgtgttgttcttggggtatgtataatggttctagcacccattggagcattgaggagta |
8043568 |
T |
|
| Q |
127 |
ttatacttgaagccaagacctaccagttttactcttgatcacctaactttgttattataacgaagttacaacttcccttgacaatgatgaaatctatttt |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8043569 |
ttatacttgaagccaagacctaccagttttactcttgatcacctaactttgttattataacgaagttacaacttccctggacaatgatgaaatctatttt |
8043668 |
T |
|
| Q |
227 |
ctctaagcgtttctctatgatttgcttattttctgccaatgaactatctatttttcaatttcagtgtacatatttgagtttcaatggaagaacaaaatga |
326 |
Q |
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| T |
8043669 |
ctctatgcttttctctatgatttgtttattttctgccaatgaactatctatttttcaatttcaatgtacatatttgagtttcaatggtagaacaaaatga |
8043768 |
T |
|
| Q |
327 |
aggaaattgtttctattcaatgatatt |
353 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
8043769 |
aggaaattgtttctattcaatgatatt |
8043795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 16 - 308
Target Start/End: Complemental strand, 7970251 - 7969970
Alignment:
| Q |
16 |
atttactaatgttataagcacatgtttaatatttgctccatatgttacagatatgtgttgttctcggggtatgtataatggttctagcacccattggagc |
115 |
Q |
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| T |
7970251 |
atttattaatgttataagcacatgtttaatatttgctccatatattacagatatgtattgttcttggggtatgcataatgattttagcacccattggagc |
7970152 |
T |
|
| Q |
116 |
attgaggagtattatacttgaagccaagacctaccagttttactcttgatcacctaactttgttattataacgaagttacaacttcccttgacaatgatg |
215 |
Q |
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| T |
7970151 |
attgaggagtattatacttgaagccaagacctaccagttttactcttgatcacctaactttgttatcataaccaagttgcaacttcccttgacaatgatg |
7970052 |
T |
|
| Q |
216 |
aaatctattttctctaagcgtttctctatgatttgcttattttctgccaatgaactatctatttttcaatttcagtgtacatatttgagtttc |
308 |
Q |
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| T |
7970051 |
atatctattttctctatgcttttctc-----------tattttctggcaatgaactatctattttccaatttcaatgcacataactgagtttc |
7969970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 25 - 308
Target Start/End: Original strand, 8033528 - 8033814
Alignment:
| Q |
25 |
tgttataagcacatgtttaatat--ttgctccatat-gttacagatatgtgttgttctcggggtatgtataatggttctagcacccattggagcattgag |
121 |
Q |
| |
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||||||| ||||||||||||| | |||||| || | |||||||||| || ||||| | || ||||||||||| || | |||||||||||||||||||| |
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| T |
8033528 |
tgttatatgcacatgtttaatttctttgctctattttgttacagataagtattgttattggcttatgtataatgattttggcacccattggagcattgag |
8033627 |
T |
|
| Q |
122 |
gagtattatacttgaagccaagacctaccagttttactcttgatcacctaactttgttattataacgaagttacaacttcccttgacaatgatgaaatct |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||| |
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| T |
8033628 |
gagtattatacttgaagccaagacctaccagttttactcttgatcacctaactttgttatcataaccaagttacaacttcccttgacaatgatgatatct |
8033727 |
T |
|
| Q |
222 |
attttctctaagcgtttctctatgatttgcttattttctgccaatgaactatctatttttcaatttcagtgtacatatttgagtttc |
308 |
Q |
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| T |
8033728 |
actttctctatgcttttctctatgatttatttattttctgccaatgaactatctattttccaatttcaatgtacataactgagtttc |
8033814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 109; Significance: 9e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 30 - 162
Target Start/End: Complemental strand, 41380675 - 41380543
Alignment:
| Q |
30 |
taagcacatgtttaatatttgctccatatgttacagatatgtgttgttctcggggtatgtataatggttctagcacccattggagcattgaggagtatta |
129 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41380675 |
taagcacatgtttaatatttgctccatatattacagatatgtattgttcttggggtatgtataatgattctagcacccattggagcattgaggagtatta |
41380576 |
T |
|
| Q |
130 |
tacttgaagccaagacctaccagttttactctt |
162 |
Q |
| |
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| |||||||||||| |||||||||||||||||| |
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| T |
41380575 |
tccttgaagccaagtcctaccagttttactctt |
41380543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 236 - 353
Target Start/End: Complemental strand, 41380515 - 41380399
Alignment:
| Q |
236 |
tttctctatgatttgcttattttctgccaatgaactatctatttttcaatttcagtgtacatatttgagtttcaatggaagaacaaaatgaaggaaattg |
335 |
Q |
| |
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||||||||||||| |||||| |||||||| ||||||||||||| |||||||| |||||||| |||||||||||| ||||||| ||||||||||||||| |
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| T |
41380515 |
tttctctatgattgatttatttgctgccaataaactatctattttccaatttcaatgtacataattgagtttcaattgaagaac-aaatgaaggaaattg |
41380417 |
T |
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| Q |
336 |
tttctattcaatgatatt |
353 |
Q |
| |
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|| |||||||||||||| |
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| T |
41380416 |
cttgtattcaatgatatt |
41380399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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