View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1688_low_7 (Length: 320)
Name: NF1688_low_7
Description: NF1688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1688_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 97 - 302
Target Start/End: Complemental strand, 44952647 - 44952443
Alignment:
| Q |
97 |
atttacatatttgaagtaaagtatcatctgtatgaaaatgtatgtgcgtcgagtcgtgtccaagtgagacgttatctaatctcgagcatgttataacact |
196 |
Q |
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| T |
44952647 |
atttacatatttgaagtaaagtatcatctttgtcaaaatgtatgtgcgtcgagtcgtgtccaagtgagacgttatctaatctcgagcatgttataacact |
44952548 |
T |
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| Q |
197 |
atacatatattagaatagtctaggcctacgaggggcgcaagacccgtgttaggaccaatgaacaaagtgaagtatgtgtgtgtaagtggtcatcatatct |
296 |
Q |
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| T |
44952547 |
atacatatattagaatagtctaggcctacgaggggcgcaagacccgtgttaggaccaatgaacaaagtgaagtatgtgtgtttaa-tggtcatcatatct |
44952449 |
T |
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| Q |
297 |
tgacaa |
302 |
Q |
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|||||| |
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| T |
44952448 |
tgacaa |
44952443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 44953472 - 44953379
Alignment:
| Q |
12 |
attattctaaattaaagtctgtgattgtttagctttctaagtgaatatgtgactatattatgttgatgtgaattatttaagtgtaatttacata |
105 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44953472 |
attattctaaattaaagtatgtgattgtttagctttctaagtgaatatgtgactatattatgttgatgtgaattctttaagtgtaatttacata |
44953379 |
T |
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