View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1688_low_8 (Length: 299)
Name: NF1688_low_8
Description: NF1688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1688_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 2083236 - 2083514
Alignment:
| Q |
1 |
gaaagcttgatttggaggacnnnnnnnnntcccattaatcaaaagcacgatgaaattcctccaaaca-tacataacagatcagtaaaccataaaattgag |
99 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
2083236 |
gaaagcttgatttggaggacaaaaaaaaatcccattaatcaaaagcacaatgaaattcctccaaacaatacataacagatcagtaagccataaaattgag |
2083335 |
T |
|
| Q |
100 |
gcaaatttacaataaagttatcaaaaacaacaatatgaaaaagggcacattgttaccagtttacacacacccccatctttgcaatgttgtg-tccaaatg |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||| |
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| T |
2083336 |
gcaaatttacaataaagttatcaaaaacaacaatatgaaaaagggcacattgttaccagtttacacaca-ccccatctttgcaatgttttgttccaaatg |
2083434 |
T |
|
| Q |
199 |
caattattcgaaaatcaactttacactagtctagctgaaactgaaacttgagagactaatccactacagcatatgtacac |
278 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
2083435 |
caattattcaaaaatcaactttacactagtctagctgaaactgaaacttgagagactaatccactacagcacatgcacac |
2083514 |
T |
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