View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1689-Insertion-1 (Length: 493)

Name: NF1689-Insertion-1
Description: NF1689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1689-Insertion-1
NF1689-Insertion-1
[»] chr2 (3 HSPs)
chr2 (8-468)||(12764838-12765302)
chr2 (298-416)||(18334465-18334583)
chr2 (320-457)||(20989854-20989991)
[»] chr3 (2 HSPs)
chr3 (228-365)||(34982130-34982267)
chr3 (351-468)||(16236362-16236479)
[»] chr6 (3 HSPs)
chr6 (304-467)||(24561313-24561478)
chr6 (342-467)||(5972100-5972227)
chr6 (342-467)||(8711907-8712034)
[»] chr7 (4 HSPs)
chr7 (282-465)||(41933874-41934057)
chr7 (233-468)||(16885627-16885865)
chr7 (292-440)||(21762674-21762822)
chr7 (259-311)||(36968422-36968474)
[»] chr8 (2 HSPs)
chr8 (259-468)||(24628381-24628592)
chr8 (385-468)||(27784964-27785046)
[»] chr4 (4 HSPs)
chr4 (259-467)||(2387786-2387993)
chr4 (215-408)||(39038965-39039161)
chr4 (318-414)||(8866830-8866926)
chr4 (298-338)||(35425993-35426033)
[»] chr1 (4 HSPs)
chr1 (259-467)||(25870299-25870507)
chr1 (264-467)||(25843204-25843405)
chr1 (215-311)||(29861471-29861568)
chr1 (259-313)||(36813859-36813913)
[»] chr5 (2 HSPs)
chr5 (299-467)||(6997559-6997729)
chr5 (259-468)||(10978867-10979079)
[»] scaffold0025 (1 HSPs)
scaffold0025 (318-467)||(154267-154417)


Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 8 - 468
Target Start/End: Complemental strand, 12765302 - 12764838
Alignment:
Q  8 ctatttataggctttaaggtagagttttacatatatcaatagattattctcctcacttcannnnnnnnnnnnnn----ttctacatattcttttctacta 103  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||                  |||||||||||| |||||||||    
T  12765302 ctatttataggctttaaggtagagttttacatacatcaatagattattctcctcacttcaaaagagagagagagagagttctacatattcctttctacta 12765203  T
Q  104 catatatttaacacaatatctctatactactcttctacttctacacatctatagaacttgaaaattgctcttctcccnnnnnnnnnncgatgactcccaa 203  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||          |||||||||||||    
T  12765202 catatatttaacacaatatctctatactactcttcaacttctacacatctatagaacttgaaaattgctcttctcccaataaaaaaacgatgactcccaa 12765103  T
Q  204 cttaaccgtctaaaatacctatgtgtgagttaattcacataggtgtattaccactgtgacttaagtcacgctcagcacatgacttaaatcaacttgagtt 303  Q
    | |||| ||| |||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||    
T  12765102 cctaactgtccaaaatacccatgtgtgagttaactcacataggtgtattaccagtgtgacttaagtcacgctcggcacatgacttaaatcaacttaagtt 12765003  T
Q  304 aactcacgttgggttctgttataaaaacaaaacaacaccatatgaattttcaaaactccatttgcggttttgatcaacaaagttgcgattttctccaaac 403  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12765002 aactcacgttgggttctgttataaaaacaaaacaacaccataggaattttcaaaactccatttgcggttttgatcaacaaagttgcgattttctccaaac 12764903  T
Q  404 ttaagtcattcaatgacaattgtaatcccaaaatcaaataattgtttattatcctgttgcattgg 468  Q
    ||||||||||||||| |||||  |||||||||||||||||| |||||||||||||||||||||||    
T  12764902 ttaagtcattcaatggcaattacaatcccaaaatcaaataagtgtttattatcctgttgcattgg 12764838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 298 - 416
Target Start/End: Complemental strand, 18334583 - 18334465
Alignment:
Q  298 tgagttaactcacgttgggttctgttataaaaacaaaacaacaccatatgaattttcaaaactccatttgcggttttgatcaacaaagttgcgattttct 397  Q
    |||||||||||||  |||||| |||||||||| ||||||| |   ||| |||| |  |||||||||||||||||||||||||| ||||||||||||||||    
T  18334583 tgagttaactcacactgggttatgttataaaatcaaaacagctttataagaatctctaaaactccatttgcggttttgatcaagaaagttgcgattttct 18334484  T
Q  398 ccaaacttaagtcattcaa 416  Q
    |||| ||||||||||||||    
T  18334483 ccaagcttaagtcattcaa 18334465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 320 - 457
Target Start/End: Complemental strand, 20989991 - 20989854
Alignment:
Q  320 tgttataaaaacaaaacaacaccatatgaattttcaaaactccatttgcggttttgatcaacaaagttgcgattttctccaaacttaagtcattcaatga 419  Q
    ||||||||||||| || | |  |||| |||||| ||||||||||||| ||| |||||||   |  ||||||||||||||||| ||||||||||||||       
T  20989991 tgttataaaaacagaatagcttcataggaatttccaaaactccattttcggatttgatctctattgttgcgattttctccaaccttaagtcattcaacac 20989892  T
Q  420 caattgtaatcccaaaatcaaataattgtttattatcc 457  Q
    |||||  |||| ||||||||| ||| || |||||||||    
T  20989891 caattacaatcacaaaatcaagtaagtgcttattatcc 20989854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 228 - 365
Target Start/End: Original strand, 34982130 - 34982267
Alignment:
Q  228 gtgagttaattcacataggtgtattaccactgtgacttaagtcacgctcagcacatgacttaaatcaacttgagttaactcacgttgggttctgttataa 327  Q
    ||||||||| |||| || ||||||||||| ||||||||||||||||||| | ||||||||||| ||||| || |||||||||||||| ||| ||||||||    
T  34982130 gtgagttaactcacgtatgtgtattaccagtgtgacttaagtcacgctcggtacatgacttaagtcaacgtgggttaactcacgttgagttttgttataa 34982229  T
Q  328 aaacaaaacaacaccatatgaattttcaaaactccatt 365  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  34982230 aaacataacaacaccatataaattttcaaaactccatt 34982267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 351 - 468
Target Start/End: Original strand, 16236362 - 16236479
Alignment:
Q  351 tttcaaaactccatttgcggttttgatcaacaaagttgcgattttctccaaacttaagtcattcaatgacaattgtaatcccaaaatcaaataattgttt 450  Q
    |||||||||||||||||  ||||||||||| ||||||| |||||||||||| |||||||||||||||| |||||  || | ||||||||| |||  | ||    
T  16236362 tttcaaaactccatttgaagttttgatcaagaaagttgtgattttctccaagcttaagtcattcaatgccaattacaaacacaaaatcaagtaagggatt 16236461  T
Q  451 attatcctgttgcattgg 468  Q
    |||||||| |||||||||    
T  16236462 attatcctattgcattgg 16236479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 304 - 467
Target Start/End: Complemental strand, 24561478 - 24561313
Alignment:
Q  304 aactcacgttgggttctgttataaaaacaaaacaacaccatatgaattttcaaaactccatt--tgcggttttgatcaacaaagttgcgattttctccaa 401  Q
    |||||| |||||||||||||||||||||| |||||||||||| |||||| ||||||| ||||  || |||||||||||||||| ||| ||||||||||||    
T  24561478 aactcatgttgggttctgttataaaaacacaacaacaccataggaatttccaaaacttcattgttgtggttttgatcaacaaacttgtgattttctccaa 24561379  T
Q  402 acttaagtcattcaatgacaattgtaatcccaaaatcaaataattgtttattatcctgttgcattg 467  Q
    | ||||| ||||||| | |||||  ||||| |||||||| ||| |||| |||||| ||| ||||||    
T  24561378 atttaagccattcaacgccaattacaatccaaaaatcaagtaagtgttaattatcatgtagcattg 24561313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 342 - 467
Target Start/End: Original strand, 5972100 - 5972227
Alignment:
Q  342 catatgaattttcaaaactccatt--tgcggttttgatcaacaaagttgcgattttctccaaacttaagtcattcaatgacaattgtaatcccaaaatca 439  Q
    |||| |||||| ||||||||||||  ||| || |||| |  ||| |||||||||||||||||  ||||| ||||||| | |||||  |||| ||||||||    
T  5972100 cataggaatttccaaaactccattgttgcagtattgagcttcaatgttgcgattttctccaactttaagccattcaacgccaattacaatcacaaaatca 5972199  T
Q  440 aataattgtttattatcctgttgcattg 467  Q
    ||||| || |||||||||| ||||||||    
T  5972200 aataagtgcttattatcctattgcattg 5972227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 342 - 467
Target Start/End: Complemental strand, 8712034 - 8711907
Alignment:
Q  342 catatgaattttcaaaactccatt--tgcggttttgatcaacaaagttgcgattttctccaaacttaagtcattcaatgacaattgtaatcccaaaatca 439  Q
    |||| |||||| ||||||||||||  ||| || |||| |  ||| |||||||||||||||||  ||||| ||||||| | |||||  |||| ||||||||    
T  8712034 cataggaatttccaaaactccattgttgcagtattgagcttcaatgttgcgattttctccaacattaagacattcaacgccaattacaatcacaaaatca 8711935  T
Q  440 aataattgtttattatcctgttgcattg 467  Q
    ||||| || |||||||||| ||||||||    
T  8711934 aataagtgcttattatcctattgcattg 8711907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 282 - 465
Target Start/End: Original strand, 41933874 - 41934057
Alignment:
Q  282 atgacttaaatcaacttgagttaactcacgttgggttctgttataaaaacaaaacaacaccatatgaattttcaaaactccatttgcggttttgatcaac 381  Q
    ||||||||| ||| | ||||||||| || | |||| |||||||||| |||| |||| |   ||| ||||||  |||||||||||||||||||||||||||    
T  41933874 atgacttaagtcagcgtgagttaacccatgctgggctctgttataagaacataacacctttataggaatttctaaaactccatttgcggttttgatcaac 41933973  T
Q  382 aaagttgcgattttctccaaacttaagtcattcaatgacaattgtaatcccaaaatcaaataattgtttattatcctgttgcat 465  Q
    |||||||||||||||| ||| |||||||| ||||| | | |||  |||| ||||||||||||| || |||||||||| ||||||    
T  41933974 aaagttgcgattttcttcaaccttaagtcgttcaacgtcgattacaatcacaaaatcaaataagtgcttattatcctattgcat 41934057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 233 - 468
Target Start/End: Original strand, 16885627 - 16885865
Alignment:
Q  233 ttaattcacataggtgtattaccactgtgacttaagtcacgctcagcacatgacttaaatcaacttgagttaactcacgttgggttctgttat-aaaaac 331  Q
    |||| |||||||||||||||||||  |||| ||||||||  ||| | ||| ||||||| ||||| | ||||||||||||||||||| |||||| ||||||    
T  16885627 ttaactcacataggtgtattaccagcgtgatttaagtcagactcggtacaagacttaagtcaacgtcagttaactcacgttgggttatgttataaaaaac 16885726  T
Q  332 aaaacaacaccatatgaattttcaaaactccat--ttgcggttttgatcaacaaagttgcgattttctccaaacttaagtcattcaatgacaattgtaat 429  Q
    | || | || ||||  ||||| | ||||| |||  ||| |||||||||   ||  ||| ||||||| ||||  |||||| |||| || | |||||  |||    
T  16885727 ataatagcaacatagaaatttccgaaactacattgttgtggttttgatttccattgtttcgattttgtccatgcttaagccattaaacgccaattacaat 16885826  T
Q  430 cccaaaatcaaataattgtttattatcctgttgcattgg 468  Q
    ||||||||||| ||| ||||||||||||| || ||||||    
T  16885827 cccaaaatcaagtaagtgtttattatcctattacattgg 16885865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 440
Target Start/End: Original strand, 21762674 - 21762822
Alignment:
Q  292 tcaacttgagttaactcacgttgggttctgttataaaaacaaaacaacaccatatgaattttcaaaactccat--ttgcggttttgatcaacaaagttgc 389  Q
    ||||| |||||||| |||| |||| || ||||||||||||| || |  || ||| |||||| |||||||||||  ||||||||||||||| ||  ||| |    
T  21762674 tcaacgtgagttaattcacattggattttgttataaaaacataatagaacaataggaatttccaaaactccattgttgcggttttgatcatcattgttcc 21762773  T
Q  390 gattttctccaaacttaagtcattcaatgacaattgtaatcccaaaatcaa 440  Q
    |||||||||||| |  ||||||||||||| |||||  || |||||||||||    
T  21762774 gattttctccaagc--aagtcattcaatgccaattacaaccccaaaatcaa 21762822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 36968422 - 36968474
Alignment:
Q  259 gtgacttaagtcacgctcagcacatgacttaaatcaacttgagttaactcacg 311  Q
    |||||||||||||  ||| ||||||||||||| ||| | ||||||||||||||    
T  36968422 gtgacttaagtcatactcggcacatgacttaagtcagcgtgagttaactcacg 36968474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 259 - 468
Target Start/End: Original strand, 24628381 - 24628592
Alignment:
Q  259 gtgacttaagtcacgctcagcacatgacttaaatcaacttgagttaactcacgttgggttctgttataaaaacaaaacaacaccatatgaattttcaaaa 358  Q
    ||||||||||||| ||||   ||||||||||| ||| |||||||||||||||| ||| || ||||||||||||| ||||||| |||| ||||||||||||    
T  24628381 gtgacttaagtcatgctcgatacatgacttaagtcagcttgagttaactcacgatggattatgttataaaaacagaacaacaacataggaattttcaaaa 24628480  T
Q  359 ctccat--ttgcggttttgatcaacaaagttgcgattttctccaaacttaagtcattcaatgacaattgtaatcccaaaatcaaataattgtttattatc 456  Q
    ||||||  |||| || ||||    ||  |||| |||||| ||||| |||||| ||||||| | |||||| ||||||||||| ||  || || ||||||||    
T  24628481 ctccattgttgcagtgttgagttccattgttgagattttgtccaagcttaagccattcaacgccaattgcaatcccaaaattaagcaagtgcttattatc 24628580  T
Q  457 ctgttgcattgg 468  Q
    || |||||||||    
T  24628581 ctattgcattgg 24628592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 385 - 468
Target Start/End: Complemental strand, 27785046 - 27784964
Alignment:
Q  385 gttgcgattttctccaaacttaagtcattcaatgacaattgtaatcccaaaatcaaataattgtttattatcctgttgcattgg 468  Q
    ||||||||||||||||| |||||||||||||| | |||||  |||| ||||||||| ||| || ||||||| || |||||||||    
T  27785046 gttgcgattttctccaaccttaagtcattcaacg-caattacaatcacaaaatcaagtaagtgcttattattctattgcattgg 27784964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 9e-31; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 259 - 467
Target Start/End: Original strand, 2387786 - 2387993
Alignment:
Q  259 gtgacttaagtcacgctcagcacatgacttaaatcaacttgagttaactcacgttgggttctgttataaaaacaaaacaacaccatatgaattttcaaaa 358  Q
    ||||||||||||||| |  ||||||||||||| ||| | |||||||||||||  |||||||| |||||||  || ||||  |||||  ||||||||||||    
T  2387786 gtgacttaagtcacgttttgcacatgacttaagtcagcgtgagttaactcacactgggttctattataaat-cataacagaaccatgagaattttcaaaa 2387884  T
Q  359 ctccatttgcggttttgatcaacaaagttgcgattttctccaaacttaagtcattcaatgacaattgtaatcccaaaatcaaataattgtttattatcct 458  Q
    ||||||||| || |||||||  ||  ||||||||||||||||| |||||||||||||| | |||||  || | ||||||||| ||| || ||| ||||||    
T  2387885 ctccatttgtggatttgatcttcattgttgcgattttctccaaccttaagtcattcaacgccaattacaaacacaaaatcaagtaagtgcttactatcct 2387984  T
Q  459 gttgcattg 467  Q
     ||||||||    
T  2387985 attgcattg 2387993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 215 - 408
Target Start/End: Original strand, 39038965 - 39039161
Alignment:
Q  215 aaaatacctatgtgtgagttaattcacataggtgtattaccactgtgacttaagtcacgctcagcacat-gacttaaatcaacttgagttaactcacgtt 313  Q
    ||||||||| ||||||| || |||| | ||||||||  ||||  |||||||||||||||||| | |||| | || |  ||||  ||||||||||||||||    
T  39038965 aaaatacctctgtgtgacttgattctcgtaggtgtaaaaccagcgtgacttaagtcacgctcggtacattggctgatttcaatgtgagttaactcacgtt 39039064  T
Q  314 gggttctgttataaaaacaaaacaacaccatatgaattttcaaaactccat--ttgcggttttgatcaacaaagttgcgattttctccaaacttaag 408  Q
    || || ||||||||||||| || |  | ||||  ||||| |||||||||||  ||||| ||||||||  ||  ||||||||||||||||| ||||||    
T  39039065 ggattatgttataaaaacagaagagtatcatagaaatttccaaaactccattgttgcgattttgatctccattgttgcgattttctccaagcttaag 39039161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 414
Target Start/End: Original strand, 8866830 - 8866926
Alignment:
Q  318 tctgttataaaaacaaaacaacaccatatgaattttcaaaactccatt--tgcggttttgatcaacaaagttgcgattttctccaaacttaagtcattc 414  Q
    |||||||||| ||||||||||   |||| |||| | ||||||||||||  |||||||||||    || || ||||||||||||||| ||||||||||||    
T  8866830 tctgttataagaacaaaacaaa--cataggaatgtccaaaactccattgttgcggttttgagttccataggtgcgattttctccaagcttaagtcattc 8866926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 35426033 - 35425993
Alignment:
Q  298 tgagttaactcacgttgggttctgttataaaaacaaaacaa 338  Q
    |||||||||||| |||| ||||||||||| |||||||||||    
T  35426033 tgagttaactcatgttgcgttctgttatagaaacaaaacaa 35425993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 259 - 467
Target Start/End: Original strand, 25870299 - 25870507
Alignment:
Q  259 gtgacttaagtcacgctcagcacatgacttaaatcaacttgagttaactcacgttgggttctgttataaaaacaaaacaacaccatatgaattttcaaaa 358  Q
    |||| ||||||||| ||| ||| ||||||||| ||| | |||||||||||  |||||||| ||||||||||||| || |  |||||| ||||||| ||||    
T  25870299 gtgatttaagtcactctcggcatatgacttaagtcagcatgagttaactcgtgttgggttgtgttataaaaacataatagaaccataagaattttgaaaa 25870398  T
Q  359 ctccatttgcggttttgatcaacaaagttgcgattttctccaaacttaagtcattcaatgacaattgtaatcccaaaatcaaataattgtttattatcct 458  Q
    |||||| ||| | |||||||   |  ||||||||||||||||| |||||||||||||| | |||||  || | |||||| || ||| || ||||||||||    
T  25870399 ctccatctgcagatttgatctttattgttgcgattttctccaaccttaagtcattcaacgccaattacaaacacaaaattaagtaagtgcttattatcct 25870498  T
Q  459 gttgcattg 467  Q
     ||||||||    
T  25870499 attgcattg 25870507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 467
Target Start/End: Original strand, 25843204 - 25843405
Alignment:
Q  264 ttaagtcacgctcagcacatgacttaaatcaacttgagttaactcacgttgggttctgttataaaaacaaaacaacaccatatgaattttcaaaactcca 363  Q
    ||||||||| ||| ||| ||||||||| ||| | |||||||||||  ||| |||| |||||||||||||| | |  |||||| ||||||| |||||||||    
T  25843204 ttaagtcactctcggcatatgacttaagtcagcgtgagttaactcgtgttaggttttgttataaaaacaataga--accataagaattttgaaaactcca 25843301  T
Q  364 tttgcggttttgatcaacaaagttgcgattttctccaaacttaagtcattcaatgacaattgtaatcccaaaatcaaataattgtttattatcctgttgc 463  Q
    | ||||| |||||||   |  |||||||||||||||||  ||||||||||||| | |||||  || |  |||||||| ||| || |||||||||| ||||    
T  25843302 tctgcggatttgatctttattgttgcgattttctccaactttaagtcattcaacgccaattacaaacataaaatcaagtaagtgcttattatcctattgc 25843401  T
Q  464 attg 467  Q
    ||||    
T  25843402 attg 25843405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 311
Target Start/End: Original strand, 29861471 - 29861568
Alignment:
Q  215 aaaatacctatgtgtgagttaattcacataggtgtattacc-actgtgacttaagtcacgctcagcacatgacttaaatcaacttgagttaactcacg 311  Q
    |||||||||  | ||||||||| ||||| |||||||| ||| | ||||||||||||||||||  ||||||||||||| ||| | ||||||||||||||    
T  29861471 aaaatacctccgcgtgagttaactcacacaggtgtataacccagtgtgacttaagtcacgctatgcacatgacttaagtcagcgtgagttaactcacg 29861568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 313
Target Start/End: Original strand, 36813859 - 36813913
Alignment:
Q  259 gtgacttaagtcacgctcagcacatgacttaaatcaacttgagttaactcacgtt 313  Q
    |||||||||||||||||| ||||||||||||| ||| | |||||||| |||||||    
T  36813859 gtgacttaagtcacgctcggcacatgacttaagtcagcgtgagttaaatcacgtt 36813913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 299 - 467
Target Start/End: Original strand, 6997559 - 6997729
Alignment:
Q  299 gagttaactcacgttgggttctgttataaaaacaaaacaacaccatatgaattttcaaaactccat--ttgcggttttgatcaacaaagttgcgattttc 396  Q
    ||||||| ||| |||||||| ||||||||||||| ||||| | |||||||||||||||||||||||  ||||  ||||||||  ||  ||||| ||||||    
T  6997559 gagttaaatcatgttgggttttgttataaaaacagaacaatatcatatgaattttcaaaactccattgttgcaattttgatcttcattgttgcaattttc 6997658  T
Q  397 tccaaacttaagtcattcaatgacaattgtaatcccaaaatcaaataattgtttattatcctgttgcattg 467  Q
    ||||| |||||| || |||  | ||||   || ||||| ||||||||| ||||||||||||| ||||||||    
T  6997659 tccaagcttaagccaatcagcgtcaatcacaaccccaagatcaaataagtgtttattatcctattgcattg 6997729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 259 - 468
Target Start/End: Complemental strand, 10979079 - 10978867
Alignment:
Q  259 gtgacttaagtcacgctcagcacatgacttaaatcaacttgagttaa---ctcacgttgggttctgttataaaaacaaaacaacaccatatgaattttc- 354  Q
    |||||||||||||||||   |||||||||||| ||  | ||||||||   |||| |||| ||| |||||| |||||| | ||  ||| || ||||||||     
T  10979079 gtgacttaagtcacgcttgacacatgacttaagtcggcgtgagttaattactcatgttgagtt-tgttattaaaacatatcagaaccgtaggaattttcc 10978981  T
Q  355 aaaactccatttgcggttttgatcaacaaagttgcgattttctccaaacttaagtcattcaatgacaattgtaatcccaaaatcaaataattgtttatta 454  Q
    |||||||||||||||||||||| |  ||  ||||| ||||||||||| |||||| ||||||| | |||||  |||| ||||||||| ||| || ||||||    
T  10978980 aaaactccatttgcggttttgagctccattgttgcaattttctccaagcttaagccattcaacgtcaattacaatcacaaaatcaagtaagtgcttatta 10978881  T
Q  455 tcctgttgcattgg 468  Q
    |||| |||||||||    
T  10978880 tcctattgcattgg 10978867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 467
Target Start/End: Complemental strand, 154417 - 154267
Alignment:
Q  318 tctgttataaaaacaaaacaacaccatatgaattttcaaaactccatt--tgcggttttgatcaacaaagttgcgattttctccaaacttaagtcattca 415  Q
    |||||||||| |||| |||| ||| ||| |||||| ||||||||||||  ||| |||||||    || || | ||||||||||||| |||||||||||||    
T  154417 tctgttataagaacagaacagcac-ataggaatttccaaaactccattgttgcagttttgagttccataggtacgattttctccaagcttaagtcattca 154319  T
Q  416 atgacaattgtaatcccaaaatcaaataattgtttattatcctgttgcattg 467  Q
    ||| |||||  || | ||||||||| ||| || | |||||||| ||||||||    
T  154318 atgccaattacaaacacaaaatcaagtaagtgctcattatcctattgcattg 154267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University