View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1689-Insertion-10 (Length: 464)
Name: NF1689-Insertion-10
Description: NF1689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1689-Insertion-10 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 8 - 464
Target Start/End: Complemental strand, 33968237 - 33967761
Alignment:
| Q |
8 |
atgtcatcttttttgaaagcgatgttacccttggttacgattcaatcgtgatcaagcattagggagttagatatattc--------------------cg |
87 |
Q |
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| T |
33968237 |
atgtcatcttttttgacagcgatgttatccttggtcacgattcaatcgtgatcaagcattagagagttagatatattcttgatttgggagatatattccg |
33968138 |
T |
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| Q |
88 |
ttcttataatattaaatgttaaatcacgcttctcaaacttttttctcctcgcttccaagaacattttttggaatacctttgaggttgaacaaggattctg |
187 |
Q |
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| T |
33968137 |
tttttataatattaaaagttaaaccacgcttctcaaacttttttctcctcgcttccaagaacattttttggaatacctttgaggttgaaaaaggattctg |
33968038 |
T |
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| Q |
188 |
tgaagcattttaaaagaaaacatatgcgctatcacttgcaaactatcaagagataaagagatttgttatattaattaagttctgccgtgattaggattga |
287 |
Q |
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| T |
33968037 |
tgaagcattttaaaagaaaacatatgcgctatcacttgcaaactatcaacagataaagagatttgctaaattaattaagttctgccgtgtttaggattga |
33967938 |
T |
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| Q |
288 |
aaaaatgcaatatctaaataacattaccggccgaaatcaagggctgttgacaataagatctctgaatcgatattactttgccctgacatgtgcaatttag |
387 |
Q |
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| T |
33967937 |
aaaaatgcaatatctaaataacattaccggccgaaatcaagggctgttgacagtaagatctctgaatcgatattactttgccctgacatgtgcaatttag |
33967838 |
T |
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| Q |
388 |
aaattaaatcagaattgcatacaaaattttgtaagtaaattgaatgaatggagcaaaaattaatgatcgaaaacaac |
464 |
Q |
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| T |
33967837 |
aaattaaatcagaattgcatacaaaattttgtaagtaaattgaatgaatggagcaaaaattaatgattgaaaacaac |
33967761 |
T |
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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 371 - 464
Target Start/End: Original strand, 33431749 - 33431842
Alignment:
| Q |
371 |
tgacatgtgcaatttagaaattaaatcagaat-tgcatacaaaattttgtaagtaaattgaatgaatggagcaaaaattaatgatcgaaaacaac |
464 |
Q |
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|||||| ||||||||||||||||||||||||| | ||||| ||| ||||||||||||||||| ||| |||| ||||||||||| ||||||||| |
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| T |
33431749 |
tgacatatgcaatttagaaattaaatcagaatatccatac-aaagtttgtaagtaaattgaaagaacatagcataaattaatgattgaaaacaac |
33431842 |
T |
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