View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1689-Insertion-11 (Length: 536)
Name: NF1689-Insertion-11
Description: NF1689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1689-Insertion-11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 15 - 291
Target Start/End: Complemental strand, 11051091 - 11050814
Alignment:
| Q |
15 |
tttctaaagtgcttggaataaaaaa-ctaaagaagaaacaattttataaaatactttgttcctgttatgcatcccacaattctttttcaaataaccattc |
113 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11051091 |
tttctaaagtgcttggaataaaaaaactaaagaaaaaacaattttataaaatactttgttcctgttacgcatcccacaattctttttcaaataaccattc |
11050992 |
T |
|
| Q |
114 |
acgtacatatttatattgatcatcatcatgaattaaaaga-taaccatacaatggtaactggtaatgagttttgtaacaagaacaattggcacaaacagt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
11050991 |
acgtacatatttatattgatcatcatcatgaattaaaagacaaaccatacaatggtaactggtaataagttttgtaacaagaacaattggcacaaagagt |
11050892 |
T |
|
| Q |
213 |
ctattgatgtttcaataaaaagaataaaagtggccggctannnnnnnnctatatggacaataagtggccggctaacttt |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11050891 |
ctattgatgtttcaataaaaagaataaaagtggccggctatttttttt-tatatggacaataagtggccggctaacttt |
11050814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 353 - 536
Target Start/End: Complemental strand, 11050731 - 11050544
Alignment:
| Q |
353 |
tgtttgaactccgactatttcatttgtgtatgtaagtttttaataactttgtcgtttcttttatctaccaaacnnnnnnnccatcaa-----agtccata |
447 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||| |||||| |||||||| |
|
|
| T |
11050731 |
tgtttgaattccgactatttcatttgtgtatgtgagtttttaacaactttgt-gtttcttttatctaccaaataaaaatatcatcaataaaaagtccata |
11050633 |
T |
|
| Q |
448 |
taacattgtgaattttgtgattcacttttgctcccatgcatgtgtcgtgcttctttgtctgttgtatcaattgacttgactctgcatta |
536 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11050632 |
taacattgtgaattttgtgattcacttttgctcccatgcatgtgtcgtgcttctttgtctgttgtatcaattgacttgactctgcatta |
11050544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 159 - 252
Target Start/End: Complemental strand, 10218984 - 10218891
Alignment:
| Q |
159 |
atacaatggtaactggtaatgagttttgtaacaagaacaattggcacaaacagtctattgatgtttcaataaaaagaataaaagtggccggcta |
252 |
Q |
| |
|
|||||||| |||||| |||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10218984 |
atacaatgataactgataataagttttgtaacaagaacaattggcacaaacgatctattgatatttcaataaaaagaataaaagtggccggcta |
10218891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 425
Target Start/End: Complemental strand, 10218831 - 10218761
Alignment:
| Q |
358 |
gaactccgactatttcatttgtgtatgtaagtttttaataacttt---gtcgtttcttttatctaccaaac |
425 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||| | || |||||||||||||| |||||||| |
|
|
| T |
10218831 |
gaacttcgactatttcatttgtgtatgtgagtttttaatagcgttgtcgtcgtttcttttatttaccaaac |
10218761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University