View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1689-Insertion-12 (Length: 316)
Name: NF1689-Insertion-12
Description: NF1689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1689-Insertion-12 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 7 - 316
Target Start/End: Complemental strand, 29786852 - 29786542
Alignment:
| Q |
7 |
aggtaattctttcgtcgtttgttttcgcaatgatagatagtgcaatttcatgtgtgaatcaaatgatggattcattctttctgttgtagattggctctat |
106 |
Q |
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| T |
29786852 |
aggtaattctttcgtcttttgttttcgcaatgatagatagtacaatttcatgtgtgaatgaaatgatggattcattctttctgttgtagattggctctat |
29786753 |
T |
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| Q |
107 |
tttgaagaaattgtttgccgaaggcgtagtgaaacgtgaagatttgtggattacctctaaactctggtttgtttcatcaatttgttttgtttccatgttt |
206 |
Q |
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| T |
29786752 |
tttgaagaaattgtttgccgaaggcgtagtgaaacgtgaagatttgtggattacctctaaactctggtttgtttcatcaattagttttgtttccatgttt |
29786653 |
T |
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| Q |
207 |
tagctaatttgctgt-nnnnnnncaatgttttaattaatttaattatttaataatgctcgtagaataggtttttcaactctataatgaattgattacatt |
305 |
Q |
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| T |
29786652 |
tagctaattttctgtaaaaaaaacaatgttttaactaatttaattatttaataatgctcgtagaataggtttttcaactctataatgaattgaatacatt |
29786553 |
T |
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| Q |
306 |
gaattatgtca |
316 |
Q |
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| T |
29786552 |
gaattgtgtca |
29786542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 108 - 178
Target Start/End: Complemental strand, 29776403 - 29776333
Alignment:
| Q |
108 |
ttgaagaaattgtttgccgaaggcgtagtgaaacgtgaagatttgtggattacctctaaactctggtttgt |
178 |
Q |
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| T |
29776403 |
ttgaagaagttgttcgatgagggcgtagtgaagcgcgaagatttgtggattacctctaaactctggtttgt |
29776333 |
T |
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