View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1689-Insertion-13 (Length: 318)
Name: NF1689-Insertion-13
Description: NF1689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1689-Insertion-13 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 9 - 318
Target Start/End: Complemental strand, 51849509 - 51849200
Alignment:
| Q |
9 |
acagaacattctaatgttagagactagttcgactaaatgttagagactattttgattaaataaatgcacaatcagagaccattttaataggtactatgac |
108 |
Q |
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| T |
51849509 |
acagaacattctaatgttagagactagttcgactaaatgttagagactattttgactaaataaatgcacaatcagagaccattttaataggtactatgac |
51849410 |
T |
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| Q |
109 |
tactcattacacattcagatatcaaaatgactgttaccttttaaaatgtcgacctttctttattactctgcggagcttagattataatcatgatgannnn |
208 |
Q |
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| T |
51849409 |
tactcattacacattcagatatcaaaataactgttaccttttaaaatgtcaacctttctttattattctgcggagcttagattataatcatgatgatttt |
51849310 |
T |
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| Q |
209 |
nnnatgttataataatgtgacctggtctaataatgtaagcttgaactaacgtgaactgctaccacaagacagagtaccgaatagttgtctggaatttgaa |
308 |
Q |
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| T |
51849309 |
tttatgttataataatgtgacctggtctaatattgtaagcttgaactaacgtgaactgctaccacaagacagagtaccgaatagttttctggaatttgaa |
51849210 |
T |
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| Q |
309 |
atgttttgga |
318 |
Q |
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|||||||||| |
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| T |
51849209 |
atgttttgga |
51849200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 45392327 - 45392286
Alignment:
| Q |
105 |
tgactactcattacacattcagatatcaaaatgactgttacc |
146 |
Q |
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| T |
45392327 |
tgactactcattacacattcaggaatcaaaatgactattacc |
45392286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 95
Target Start/End: Original strand, 10067710 - 10067761
Alignment:
| Q |
44 |
aatgttagagactattttgattaaataaatgcacaatcagagaccattttaa |
95 |
Q |
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| T |
10067710 |
aatgtcagagactattttgattaacaaaatacacaatcagagactattttaa |
10067761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 23140558 - 23140509
Alignment:
| Q |
44 |
aatgttagagactattttgattaaataaatgcacaatcagagaccatttt |
93 |
Q |
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| T |
23140558 |
aatgttagagactattttgactaacaaaatgcaaaattagagaccatttt |
23140509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 51889796 - 51889755
Alignment:
| Q |
105 |
tgactactcattacacattcagatatcaaaatgactgttacc |
146 |
Q |
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| T |
51889796 |
tgactactccttacacattcagagatcaaaatgactattacc |
51889755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 7672504 - 7672552
Alignment:
| Q |
44 |
aatgttagagactattttgattaaataaatgcacaatcagagaccattt |
92 |
Q |
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|||||||||||||||||||| ||| ||||| |||||||||||| |||| |
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| T |
7672504 |
aatgttagagactattttgactaacaaaatgtacaatcagagacaattt |
7672552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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