View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1689-Insertion-2 (Length: 336)

Name: NF1689-Insertion-2
Description: NF1689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1689-Insertion-2
NF1689-Insertion-2
[»] chr5 (16 HSPs)
chr5 (128-336)||(42840633-42840841)
chr5 (7-190)||(42840460-42840643)
chr5 (9-174)||(24655467-24655632)
chr5 (15-174)||(29416755-29416914)
chr5 (256-336)||(21699394-21699474)
chr5 (42-190)||(41996205-41996353)
chr5 (237-336)||(42729899-42729998)
chr5 (231-280)||(41996385-41996434)
chr5 (15-128)||(16486712-16486825)
chr5 (231-289)||(37408516-37408574)
chr5 (7-128)||(39724518-39724639)
chr5 (231-336)||(42411633-42411738)
chr5 (15-133)||(28019144-28019262)
chr5 (38-128)||(42413994-42414084)
chr5 (231-287)||(42414622-42414678)
chr5 (49-146)||(42777768-42777865)
[»] scaffold0068 (1 HSPs)
scaffold0068 (256-336)||(14436-14516)
[»] chr8 (2 HSPs)
chr8 (7-138)||(15631811-15631940)
chr8 (8-160)||(15600529-15600679)
[»] chr3 (1 HSPs)
chr3 (7-126)||(2703723-2703842)
[»] chr2 (1 HSPs)
chr2 (7-112)||(27716943-27717048)


Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 128 - 336
Target Start/End: Original strand, 42840633 - 42840841
Alignment:
Q  128 agttgtctctttatagtttgctataaaagcaatggatccatttaataccaccaattttctcttcttgttataattaaaatcaaaatcaaaagtatctcct 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42840633 agttgtctctttatagtttgctataaaagcaatggatccatttaataccaccaattgtctcttcttgttataattaaaatcaaaatcaaaagtatctcct 42840732  T
Q  228 tcataagaaggtatgggtgttgtaataaaagattcattgctgaagtcaaatgaaaccaaatatgtatgtgttacttctatatcccaccaatgagacactc 327  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  42840733 tcaaaagaaggtatgggtgttgtaataaaagattcattgctgaagtcaaatgaaaccaaatatgtatgtgttacttctatatcccaccaatgagacattc 42840832  T
Q  328 catccatgt 336  Q
    |||||||||    
T  42840833 catccatgt 42840841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 7 - 190
Target Start/End: Original strand, 42840460 - 42840643
Alignment:
Q  7 atatattgcccttcttccctgctccaattggatactcaaggtaaggtaagggaccaacaataaagaccttagtccatgannnnnnnacaccaagttcacc 106  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||       ||||||||||||||    
T  42840460 atatattgcccttcttccctgctccaattggatactcaaggcaaggtaagggaccaacaataaagactttagtccatgattcttttacaccaagttcacc 42840559  T
Q  107 caaaattgaaatttgaaatgtagttgtctctttatagtttgctataaaagcaatggatccatttaataccaccaattttctctt 190  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||    
T  42840560 caaaattgaaatgtgaaatgtagttgtctctttatagtttgctataaaagcaacggatccatttaataccaccagttgtctctt 42840643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 9 - 174
Target Start/End: Complemental strand, 24655632 - 24655467
Alignment:
Q  9 atattgcccttcttccctgctccaattggatactcaaggtaaggtaagggaccaacaataaagaccttagtccatgannnnnnnacaccaagttcaccca 108  Q
    |||| ||||||||| || ||||| || |||||||||||| |||| ||||| || |||||||||| ||||||||||||       ||||| ||||| ||||    
T  24655632 atatcgcccttctttccagctccgataggatactcaaggcaaggaaagggccctacaataaagatcttagtccatgattcctttacaccgagttctccca 24655533  T
Q  109 aaattgaaatttgaaatgtagttgtctctttatagtttgctataaaagcaatggatccatttaata 174  Q
    |||||||||| |||||||||  ||||||||||||  || |||| |||||||| || || |||||||    
T  24655532 aaattgaaatgtgaaatgtacctgtctctttataacttactatgaaagcaatagacccgtttaata 24655467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 174
Target Start/End: Original strand, 29416755 - 29416914
Alignment:
Q  15 cccttcttccctgctccaattggatactcaaggtaaggtaagggaccaacaataaagaccttagtccatgannnnnnnacaccaagttcacccaaaattg 114  Q
    |||||||| |||||||| || ||| |||||||| |||| ||||| || |||||||||| ||||||||||||       ||||| ||||| ||||||||||    
T  29416755 cccttctttcctgctccgataggacactcaaggcaaggaaagggccctacaataaagatcttagtccatgattcctttacaccgagttctcccaaaattg 29416854  T
Q  115 aaatttgaaatgtagttgtctctttatagtttgctataaaagcaatggatccatttaata 174  Q
    |||| |||||||||  ||||||| ||||  ||  ||| |||||||| || ||||||||||    
T  29416855 aaatgtgaaatgtacctgtctctatataacttattatgaaagcaatagacccatttaata 29416914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 21699474 - 21699394
Alignment:
Q  256 aagattcattgctgaagtcaaatgaaaccaaatatgtatgtgttacttctatatcccaccaatgagacactccatccatgt 336  Q
    ||||||||||||||||||||||||| |||||||||| ||||| | ||  | || ||||||||||| |||||||||||||||    
T  21699474 aagattcattgctgaagtcaaatgacaccaaatatgcatgtgcttctcttttagcccaccaatgacacactccatccatgt 21699394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 42 - 190
Target Start/End: Original strand, 41996205 - 41996353
Alignment:
Q  42 tcaaggtaaggtaagggaccaacaataaagaccttagtccatgannnnnnnacaccaagttcacccaaaattgaaatttgaaatgtagttgtctctttat 141  Q
    ||||||||| |||| || |||||||| |||| ||||||||||||       ||| ||||||||||||||||| |||| |||||||||| |||||   |||    
T  41996205 tcaaggtaatgtaaaggcccaacaatgaagagcttagtccatgattcctttacatcaagttcacccaaaattaaaatgtgaaatgtagatgtcttggtat 41996304  T
Q  142 agtttgctataaaagcaatggatccatttaataccaccaattttctctt 190  Q
      |||   ||||||||||| |||||||||||||||| ||| | ||||||    
T  41996305 gatttaacataaaagcaatagatccatttaataccatcaaatgtctctt 41996353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 237 - 336
Target Start/End: Complemental strand, 42729998 - 42729899
Alignment:
Q  237 ggtatgggtgttgtaataaaagattcattgctgaagtcaaatgaaaccaaatatgtatgtgttacttctatatcccaccaatgagacactccatccatgt 336  Q
    |||||| ||||||||||  ||||||||||| ||||||||||||| |||||||||| ||||| | ||  | || ||||||||| | |||||||||||||||    
T  42729998 ggtatgagtgttgtaatgcaagattcattgttgaagtcaaatgacaccaaatatgcatgtgcttctattttagcccaccaattacacactccatccatgt 42729899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 231 - 280
Target Start/End: Original strand, 41996385 - 41996434
Alignment:
Q  231 taagaaggtatgggtgttgtaataaaagattcattgctgaagtcaaatga 280  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  41996385 taagagggtatgggtgttgtaatgaaagattcattgctgaagtcaaatga 41996434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 16486712 - 16486825
Alignment:
Q  15 cccttcttccctgctccaattggatactcaaggtaaggtaagggaccaacaataaagaccttagtccatgannnnnnnacaccaagttcacccaaaattg 114  Q
    |||||||| || |||||||| ||||||||||| ||||||||||| || | ||| |||| |||| |||||||       ||||||| |||||| |||||||    
T  16486712 cccttctttccggctccaataggatactcaagataaggtaagggccctaaaatgaagatcttaatccatgatttctttacaccaaattcacctaaaattg 16486811  T
Q  115 aaatttgaaatgta 128  Q
    |||| |||||||||    
T  16486812 aaatgtgaaatgta 16486825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 37408516 - 37408574
Alignment:
Q  231 taagaaggtatgggtgttgtaataaaagattcattgctgaagtcaaatgaaaccaaata 289  Q
    ||||| |||||||||||||||||||||||||| |||| ||||||||| || ||||||||    
T  37408516 taagagggtatgggtgttgtaataaaagattccttgcagaagtcaaacgacaccaaata 37408574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 39724518 - 39724639
Alignment:
Q  7 atatattgcccttcttccctgctccaattggatactcaaggtaaggtaagggaccaacaataaagaccttagtccatgannnnnnnacaccaagttcacc 106  Q
    |||| ||||||||||| || ||||| |||||||| |||||| ||||||| || |||||||| ||||  |||||||||||       | ||| ||||| ||    
T  39724518 atatcttgcccttcttacccgctccgattggataatcaaggcaaggtaaaggtccaacaatgaagagtttagtccatgattcttttataccgagttcccc 39724617  T
Q  107 caaaattgaaatttgaaatgta 128  Q
    ||||||||| || |||||||||    
T  39724618 caaaattgatatgtgaaatgta 39724639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 336
Target Start/End: Complemental strand, 42411738 - 42411633
Alignment:
Q  231 taagaaggtatgggtgttgtaataaaagattcattgctgaagtcaaatgaaaccaaatatgtatgtgttacttctat-atcccaccaatgagacactcca 329  Q
    ||||| |||||||||  | ||||  |||||||| ||||||||||||| || |||||||||||| ||||| || || | | || |||||||||||||||||    
T  42411738 taagagggtatgggtaatttaatgcaagattcactgctgaagtcaaacgacaccaaatatgtacgtgtt-ctactttcacccaaccaatgagacactcca 42411640  T
Q  330 tccatgt 336  Q
    |||||||    
T  42411639 tccatgt 42411633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 28019262 - 28019144
Alignment:
Q  15 cccttcttccctgctccaattggatactcaaggtaaggtaagggaccaacaataaagaccttagtccatgannnnnnnacaccaagttcacccaaaattg 114  Q
    |||||||| || ||||| ||||||| ||||||| ||||||| || || ||||  ||||  |||||||||||       |||| |||||||||||| ||||    
T  28019262 cccttctttcccgctccgattggatgctcaaggcaaggtaatggtcctacaacgaagattttagtccatgattcctttacactaagttcacccaagattg 28019163  T
Q  115 aaatttgaaatgtagttgt 133  Q
    |||| |||| |||||||||    
T  28019162 aaatgtgaattgtagttgt 28019144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 128
Target Start/End: Complemental strand, 42414084 - 42413994
Alignment:
Q  38 atactcaaggtaaggtaagggaccaacaataaagaccttagtccatgannnnnnnacaccaagttcacccaaaattgaaatttgaaatgta 128  Q
    |||| ||| |||||||||||| |||||||||||||  |||||||||||       ||||||| ||| |||||||||||||| |||| ||||    
T  42414084 atacccaaagtaaggtaagggtccaacaataaagagtttagtccatgactcctttacaccaaattcgcccaaaattgaaatgtgaattgta 42413994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 287
Target Start/End: Complemental strand, 42414678 - 42414622
Alignment:
Q  231 taagaaggtatgggtgttgtaataaaagattcattgctgaagtcaaatgaaaccaaa 287  Q
    ||||| |||||||||||| ||||  |||||||| |||||||||||||||| ||||||    
T  42414678 taagagggtatgggtgttataatgcaagattcactgctgaagtcaaatgacaccaaa 42414622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 42777865 - 42777768
Alignment:
Q  49 aaggtaagggaccaacaataaagaccttagtccatgannnnnnnacaccaagttcacccaaaattgaaatttgaaatgtagttgtctctttatagttt 146  Q
    |||||||||| || ||||| |||| ||||||||||||       ||||| ||||| || ||||||||||| |||||||||| ||| ||| | ||||||    
T  42777865 aaggtaagggccctacaatgaagatcttagtccatgattcttttacaccgagttcgcctaaaattgaaatgtgaaatgtagatgtgtctgtgtagttt 42777768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 14436 - 14516
Alignment:
Q  256 aagattcattgctgaagtcaaatgaaaccaaatatgtatgtgttacttctatatcccaccaatgagacactccatccatgt 336  Q
    ||||||||||||||||||||||||| |||||||||| ||||| | ||  | || ||||||||||| |||||||||||||||    
T  14436 aagattcattgctgaagtcaaatgacaccaaatatgcatgtgcttctcttttagcccaccaatgacacactccatccatgt 14516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 15631811 - 15631940
Alignment:
Q  7 atatattgcccttcttccctgctccaattggatactcaaggtaaggtaagggaccaacaataaagaccttagtccatgannnnnnnacaccaagttcacc 106  Q
    |||||||||| |||||||| |||  ||| |||||||||||| |||| || |   ||| ||||||||  |||||||||||       |||||  |||||||    
T  15631811 atatattgccattcttccccgct--aataggatactcaaggcaagggaatgattcaaaaataaagagtttagtccatgattctattacaccgggttcacc 15631908  T
Q  107 caaaattgaaatttgaaatgtagttgtctctt 138  Q
    |||||||||||| ||| |||||| ||||||||    
T  15631909 caaaattgaaatgtgatatgtagatgtctctt 15631940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 160
Target Start/End: Original strand, 15600529 - 15600679
Alignment:
Q  8 tatattgcccttcttccctgctccaattggatactcaaggtaaggtaagggaccaacaataaagaccttagtccatgannnnnnnacaccaagttcaccc 107  Q
    ||||||||| |||||||| |||  ||| |||||||||||| |||| || |   ||| ||||||||  |||||||||||       |||||  ||||||||    
T  15600529 tatattgccattcttccccgct--aataggatactcaaggcaagggaatgattcaaaaataaagagtttagtccatgattctattacaccgggttcaccc 15600626  T
Q  108 aaaattgaaatttgaaatgtagttgtctctttatagtttgctataaaagcaat 160  Q
    |||||||| || ||| |||||| |||||||| ||| ||||  || ||||||||    
T  15600627 aaaattgagatgtgatatgtagatgtctcttcataatttgagatgaaagcaat 15600679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 126
Target Start/End: Complemental strand, 2703842 - 2703723
Alignment:
Q  7 atatattgcccttcttccctgctccaattggatactcaaggtaaggtaagggaccaacaataaagaccttagtccatgannnnnnnacaccaagttcacc 106  Q
    |||||||||||||||||| ||||||||| |||   |||| | |||  |||||  |||||  |||||  ||| |||||||       ||||||||||||||    
T  2703842 atatattgcccttcttccatgctccaataggactatcaatgcaagacaagggttcaacatcaaagagtttaatccatgattccttgacaccaagttcacc 2703743  T
Q  107 caaaattgaaatttgaaatg 126  Q
    ||||||||||||||| ||||    
T  2703742 caaaattgaaatttggaatg 2703723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 27716943 - 27717048
Alignment:
Q  7 atatattgcccttcttccctgctccaattggatactcaaggtaaggtaagggaccaacaataaagaccttagtccatgannnnnnnacaccaagttcacc 106  Q
    |||||||||||||||||||| ||||||| |||| ||| | | |||  |||||||||| |  ||||| |||| |||||||       |||||| |||||||    
T  27716943 atatattgcccttcttccctactccaataggatgctccatgcaagacaagggaccaatatcaaagagcttaatccatgattccttgacaccaggttcacc 27717042  T
Q  107 caaaat 112  Q
    ||||||    
T  27717043 caaaat 27717048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University