View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1689-Insertion-3 (Length: 730)
Name: NF1689-Insertion-3
Description: NF1689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1689-Insertion-3 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 622; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 7 - 730
Target Start/End: Original strand, 13884215 - 13884940
Alignment:
| Q |
7 |
actttgatcagtagatgactctgaagtccttttctcgcggtttcttctttcgtgcactaaaagaattgcacatttgcaagtgaaatataggagcaacaat |
106 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
13884215 |
actttgatcagtagatgactctgaagtccttttctcgcggtttcttctttcgtgcactagaagaattgcgcatttgcaagtgaaatataggagcaacaat |
13884314 |
T |
|
| Q |
107 |
ccaagagagaaaatgataacgaattcgatgacaataattgatcccaaggctgttatacaaattgaaagagcatgtaagttactgaacaaaacacctgtat |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13884315 |
ccaagagagaaaatgataacgaattcgatgacaataattgatcccaaggctgttatacaaattgaaagagcatgtaagttactgaacaaaacacctgtat |
13884414 |
T |
|
| Q |
207 |
gcttctacattctattgaatttaaaggcagtttt-cgactaaactcagattatgaaacctgcaacttaccgtgagcaagaaataaacccattggttgctt |
305 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13884415 |
gcttctatattctattgaatttaaaggcagtttttcgactaaactcagattatgaaacctgcaacttaccgtgagcaagaaatgaacccattggttgctt |
13884514 |
T |
|
| Q |
306 |
tctcattaaattaaccatagcctcagtgtataatggcattgacattccttctgtacaatctggataacaaccatagtttcccatgtcattcaatgtcaat |
405 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
13884515 |
tctcattaaattaaccatagcctcggtgtataatggcattgacattccttctgtacaatctggatgacaaccatagtttcccatgtcattcaatgtcaat |
13884614 |
T |
|
| Q |
406 |
gttaatgtagctccatgctcatctccctggaccaaaaaaggaaactgtgataattgaagttctaaggtacacaattcacttgatatgtttatagcaggtt |
505 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
13884615 |
gttaatgtagctccatgctcatctccctggaccaaaaaaggaaactgtgataattgaagttctaaggtacacagttcgcttgatatgtttatagcaggtt |
13884714 |
T |
|
| Q |
506 |
ttttccattactaagaacaaaggatatcatccagaaaaggtgcttctacttttatcgtgttagaacgtaaatcccagttgaaaaggaaatagatttgaaa |
605 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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|
| T |
13884715 |
ttttccattactcagaacaaaggatatcatccagaaaaggtgcttctacttttatcgtgttagaacgtaaaccccagttgaaaagaaaatagatttgaaa |
13884814 |
T |
|
| Q |
606 |
aatgcaaacaaagaacatatgggatttgattatggagttcatcaagttgtgcctacat-tttgactg-nnnnnnnttctttgattgaagtgcagctgcat |
703 |
Q |
| |
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||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
13884815 |
aatgcaaacaaagaacatacgagatttgattatggagttcatcaagttgtgcctacatctttgactgaaaaaaaattctttgattgaagtgcagctgcat |
13884914 |
T |
|
| Q |
704 |
tatcttttctattattcagacttaggg |
730 |
Q |
| |
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|||| |||||||||||||||||||||| |
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|
| T |
13884915 |
tatc-tttctattattcagacttaggg |
13884940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 7 - 730
Target Start/End: Original strand, 14024340 - 14025065
Alignment:
| Q |
7 |
actttgatcagtagatgactctgaagtccttttctcgcggtttcttctttcgtgcactaaaagaattgcacatttgcaagtgaaatataggagcaacaat |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
14024340 |
actttgatcagtagatgactctgaagtccttttctcgcggtttcttctttcgtgcactagaagaattgcgcatttgcaagtgaaatataggagcaacaat |
14024439 |
T |
|
| Q |
107 |
ccaagagagaaaatgataacgaattcgatgacaataattgatcccaaggctgttatacaaattgaaagagcatgtaagttactgaacaaaacacctgtat |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14024440 |
ccaagagagaaaatgataacgaattcgatgacaataattgatcccaaggctgttatacaaattgaaagagcatgtaagttactgaacaaaacacctgtat |
14024539 |
T |
|
| Q |
207 |
gcttctacattctattgaatttaaaggcagtttt-cgactaaactcagattatgaaacctgcaacttaccgtgagcaagaaataaacccattggttgctt |
305 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14024540 |
gcttctatattctattgaatttaaaggcagtttttcgactaaactcagattatgaaacctgcaacttaccgtgagcaagaaatgaacccattggttgctt |
14024639 |
T |
|
| Q |
306 |
tctcattaaattaaccatagcctcagtgtataatggcattgacattccttctgtacaatctggataacaaccatagtttcccatgtcattcaatgtcaat |
405 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14024640 |
tctcattaaattaaccatagcctcggtgtataatggcattgacattccttctgtacaatctggatgacaaccatagtttcccatgtcattcaatgtcaat |
14024739 |
T |
|
| Q |
406 |
gttaatgtagctccatgctcatctccctggaccaaaaaaggaaactgtgataattgaagttctaaggtacacaattcacttgatatgtttatagcaggtt |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
14024740 |
gttaatgtagctccatgctcatctccctggaccaaaaaaggaaactgtgataattgaagttctaaggtacacagttcgcttgatatgtttatagcaggtt |
14024839 |
T |
|
| Q |
506 |
ttttccattactaagaacaaaggatatcatccagaaaaggtgcttctacttttatcgtgttagaacgtaaatcccagttgaaaaggaaatagatttgaaa |
605 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
14024840 |
ttttccattactcagaacaaaggatatcatccagaaaaggtgcttctacttttatcgtgttagaacgtaaaccccagttgaaaagaaaatagatttgaaa |
14024939 |
T |
|
| Q |
606 |
aatgcaaacaaagaacatatgggatttgattatggagttcatcaagttgtgcctacat-tttgactg-nnnnnnnttctttgattgaagtgcagctgcat |
703 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
14024940 |
aatgcaaacaaagaacatacgagatttgattatggagttcatcaagttgtgcctacatctttgactgaaaaaaaattctttgattgaagtgcagctgcat |
14025039 |
T |
|
| Q |
704 |
tatcttttctattattcagacttaggg |
730 |
Q |
| |
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|||| |||||||||||||||||||||| |
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|
| T |
14025040 |
tatc-tttctattattcagacttaggg |
14025065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 178; Significance: 1e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 7 - 443
Target Start/End: Original strand, 7684895 - 7685346
Alignment:
| Q |
7 |
actttgatcagtagatgactctgaagtccttttctcgcggtttcttctttcgtgcactaaaagaattgcacatttgcaagtgaaatataggagcaacaat |
106 |
Q |
| |
|
||||||||||||||| | ||| ||||| |||||||| ||||||||||| ||||| | |||||||||||||| |||||||||||||| ||||||||| |
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| T |
7684895 |
actttgatcagtagaggcctcggaagttcttttctcattctttcttctttcatgcacaaggagaattgcacatttacaagtgaaatatagaagcaacaat |
7684994 |
T |
|
| Q |
107 |
ccaagagagaaaatgataacgaattcgatgacaataattgatcccaaggctgttatacaaattgaaagagcatgtaagttactgaacaaaacacctgtat |
206 |
Q |
| |
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|| ||| |||||||||||||||| |||||||||||||||| ||| ||||||||| |||||| |||||| | |||||| | || ||| || ||||| |
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| T |
7684995 |
ccgagacagaaaatgataacgaactcgatgacaataattgttcctaaggctgttgcacaaataaaaagagattttaagttgcagagaaaaccatatgtat |
7685094 |
T |
|
| Q |
207 |
gcttctacattctattgaatttaaaggcagtttt---------------cgactaaactcagattatgaaacctgcaacttaccgtgagcaagaaataaa |
291 |
Q |
| |
|
||||||| |||||||||| |||| | | ||| | | |||||||||||||||||| ||||||||||| ||||||||||||| || |
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|
| T |
7685095 |
gcttctattttctattgaacttaatgatatgtttaattatgaatacttccaattaaactcagattatgaaatctgcaacttactgtgagcaagaaatgaa |
7685194 |
T |
|
| Q |
292 |
cccattggttgctttctcattaaattaaccatagcctcagtgtataatggcattgacattccttctgtacaatctggataacaaccatagtttcccatgt |
391 |
Q |
| |
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|||||||||||||||||||||| ||||| ||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
7685195 |
tccattggttgctttctcattaagttaacgatagcctcagtatataattgcattgacattccttcttcacaatctggataacaaccataatttcccatgt |
7685294 |
T |
|
| Q |
392 |
cattcaatgtcaatgttaatgtagctccatgctcatctccctggaccaaaaa |
443 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
7685295 |
cattcaatgtcaatgttaacgtagctccatgctcatctccctggacaaaaaa |
7685346 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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