View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1689-Insertion-4 (Length: 439)

Name: NF1689-Insertion-4
Description: NF1689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1689-Insertion-4
NF1689-Insertion-4
[»] chr5 (1 HSPs)
chr5 (5-439)||(10930364-10930798)


Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 5 - 439
Target Start/End: Complemental strand, 10930798 - 10930364
Alignment:
Q  5 acatcctcctccaccacccttccttcctctctcgtaatctctccgtccaatctatctccgtttccgataatctcatcctcattgccgccaccactcataa 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||    
T  10930798 acatcctcctccaccacccttccttcctctctcgtaatctctccgtccaatctatctccgtctccgataatctcatcctcctcgccgccaccactcataa 10930699  T
Q  105 tctcaccccagcactctcccatcctttgatttttaacccaagtcagggctggtctgtcggacctgccctaactaatccacgccgctggtgtgcattaggc 204  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10930698 tctcaccccagcactatcccatcctttgattttcaacccaagtcagggctggtctgtcggacctgccctaactaatccacgccgctggtgtgcattaggc 10930599  T
Q  205 acatcagaaggtatggtctatgtagcaagtggtattgggtcccatttctcagttgatgtagcaaagtcaatagagaagtgggacccgatcaacgatccca 304  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10930598 acatcagagggtatggtctatgtagcaagtggtattgggtcccatttctcagttgatgtagcaaagtcaatagagaagtgggacccgatcaacgatccca 10930499  T
Q  305 tttgggagaagaaaaccgatatgaaggacggcagattcagcagggaagctgtagatgctgtaggatggagaggaaagctttatatggtaaacgtaaaagg 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10930498 tttgggagaagaaaaccgatatgaaggacggcagattcagcagggaagctgtagatgctgttggatggagaggaaagctttatatggtaaacgtaaaagg 10930399  T
Q  405 cgatgctgctaaagaaggggttgtgtatgatgttg 439  Q
    |||||||||||||||||| ||||||||||||||||    
T  10930398 cgatgctgctaaagaaggagttgtgtatgatgttg 10930364  T

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