View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1689-Insertion-5 (Length: 562)

Name: NF1689-Insertion-5
Description: NF1689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1689-Insertion-5
NF1689-Insertion-5
[»] chr4 (10 HSPs)
chr4 (11-562)||(9593258-9593789)
chr4 (6-494)||(9581530-9582001)
chr4 (6-494)||(9587225-9587696)
chr4 (290-483)||(9605997-9606190)
chr4 (6-396)||(9602199-9602603)
chr4 (6-228)||(9569251-9569473)
chr4 (213-558)||(9569616-9569978)
chr4 (6-99)||(54295006-54295099)
chr4 (38-90)||(9571882-9571934)
chr4 (169-236)||(54291085-54291150)
[»] chr6 (13 HSPs)
chr6 (11-283)||(29131372-29131643)
chr6 (6-151)||(29012891-29013036)
chr6 (6-276)||(32740480-32740733)
chr6 (6-142)||(29152012-29152148)
chr6 (32-142)||(29124233-29124343)
chr6 (6-142)||(32960616-32960752)
chr6 (6-99)||(34281977-34282070)
chr6 (6-99)||(34278373-34278466)
chr6 (178-302)||(29145527-29145651)
chr6 (64-117)||(19697377-19697430)
chr6 (70-146)||(34258133-34258209)
chr6 (32-142)||(32744743-32744853)
chr6 (38-82)||(286324-286368)
[»] chr7 (1 HSPs)
chr7 (6-300)||(42446396-42446690)
[»] scaffold0054 (2 HSPs)
scaffold0054 (6-242)||(39601-39837)
scaffold0054 (6-242)||(33250-33486)
[»] chr5 (1 HSPs)
chr5 (181-214)||(43323021-43323054)


Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 562
Target Start/End: Complemental strand, 9593789 - 9593258
Alignment:
Q  11 tcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtaggtaagaaaggagaaatattcttcatcagaaaagataaagaactagtttatct 110  Q
    |||||||||| |||  |||||||| | |||||||||| |||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||| |||    
T  9593789 tcttcattgtcggaccgttgtctttcattgagcgtcccatcggagtgggtacgaaaggagaaatattcttcatcagagaagataaagaactagtttgtct 9593690  T
Q  111 tgatttaagtactcaaacgattgtggagcttgcttacaaagaagtgaactgtattgaccggatagtcatatacaaggaaaacattcttccaattggagga 210  Q
    |||||||| |||||||||||||||| ||||||||| |||| ||||||| | |||||| |||||| | |||||||||||||||||||||||||||||||||    
T  9593689 tgatttaaatactcaaacgattgtgaagcttgcttgcaaaaaagtgaattctattgatcggatattaatatacaaggaaaacattcttccaattggagga 9593590  T
Q  211 ataagtatttagttatttttcttgttttcacctggagcaaaatgattgtggccattgggatattacattgtatgcgaagtgtcttgtcaattagaa-tct 309  Q
    ||||||| ||||||||||| |||||||||||| ||||||||||||| ||||  ||||| ||||||| |||||||| |||||||||||||||| ||| ||     
T  9593589 ataagtaattagttattttccttgttttcaccaggagcaaaatgatcgtggtgattggaatattaccttgtatgcaaagtgtcttgtcaattggaattcc 9593490  T
Q  310 cggagattgattgaatctgtagcgggccattatccttgtatcgttgttgatgcttatgtccttctgtttttggctcatctgttgctgcttttctggtctg 409  Q
    | ||||||| ||||||| |||||||| |||||||||||||| |||| | ||||||||||  || ||||||| |||||                   ||||    
T  9593489 ctgagattgcttgaatcggtagcgggtcattatccttgtattgttgctcatgcttatgtggttttgttttttgctca-------------------tctg 9593409  T
Q  410 tggttgctgtttggcggtgggggttctggaagtttcttgggtcaatcccactgtttttctttgcagccttcaggcttgttttgtgcgttttcctcgcgtg 509  Q
     |||||||||||||| ||||||||||||||||| ||||| ||| ||||||| |||||| | |||||| |||||||||||||||||||  |||||  ||||    
T  9593408 cggttgctgtttggcagtgggggttctggaagtgtcttgagtctatcccaccgtttttatgtgcagctttcaggcttgttttgtgcggcttcct--cgtg 9593311  T
Q  510 gcctatcaaggtttgctgtagtcgtgttttcttctg-tttgattggtggaggca 562  Q
    ||||||||||||||| || |||||||||||| |||| ||||||| |||||||||    
T  9593310 gcctatcaaggtttggtgcagtcgtgttttc-tctgttttgatttgtggaggca 9593258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 6 - 494
Target Start/End: Complemental strand, 9582001 - 9581530
Alignment:
Q  6 caaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtaggtaagaaaggagaaatattcttcatcagaaaagataaagaactagtt 105  Q
    |||||||||||| ||||||  |||||||||| ||||||||||||| ||||| || | |||||||||||||||| |||||||| |||||||||||||||||    
T  9582001 caaactcttcatggttggaccgttgtcttgcattgagcgtcctattggagtgggaacgaaaggagaaatattcgtcatcagacaagataaagaactagtt 9581902  T
Q  106 tatcttgatttaagtactcaaacgattgtggagcttgcttacaaagaagtgaactgtattgaccggatagtcatatacaaggaaaacattcttccaattg 205  Q
    | |||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| |||||||| || ||||||| |||||||||||||||||    
T  9581901 tgtcttgatttaagtactcaaatgattgtggagcttgcttacaaagaagtgaattctattgatcggatagtaatgtacaagg-aaacattcttccaattg 9581803  T
Q  206 gaggaataagtatttagttatttttcttgttttcacctggagcaaaatgattgtggccattgggatattacattgtatgcgaagtgtcttgtcaattaga 305  Q
    |||||||||||| ||||||||||||         ||| |||| |||||||||||||  ||||||||||||| || ||| | |||||||||||||||| ||    
T  9581802 gaggaataagtaattagttattttt---------accaggagtaaaatgattgtggtgattgggatattaccttatatacaaagtgtcttgtcaatttga 9581712  T
Q  306 atctcggagattgattgaatctgtagcgggccattatccttgtatcgttgttgatgcttatgtccttctgtttttggctcatctgttgctgcttttctgg 405  Q
    ||  | ||||| | ||||||| ||||| ||||||| |||||||||||| | ||||| || |||  ||||| |||||||||||||| ||||| ||||||||    
T  9581711 attccagagatcgcttgaatcggtagcaggccattgtccttgtatcgtcgctgatgattctgtggttctg-ttttggctcatctggtgctg-ttttctgg 9581614  T
Q  406 tctgtggttg-ctgtttggcggtgggggttctggaagtttcttgggtcaatcccactgtttttctttgcagccttcaggcttgttttgtg 494  Q
    ||||  |||| ||||||  |  |||    |||||||||||| |||||| ||||||| |||||||| |||||| |||||||||||| ||||    
T  9581613 tctgctgttgcctgtttttc--tgg----tctggaagtttcctgggtcgatcccaccgtttttctgtgcagcgttcaggcttgttgtgtg 9581530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 6 - 494
Target Start/End: Complemental strand, 9587696 - 9587225
Alignment:
Q  6 caaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtaggtaagaaaggagaaatattcttcatcagaaaagataaagaactagtt 105  Q
    |||||||||||| ||||||  |||||||||| ||||||||||||| ||||| || | |||||||||||||||| |||||||| |||||||||||||||||    
T  9587696 caaactcttcatggttggaccgttgtcttgcattgagcgtcctattggagtgggaacgaaaggagaaatattcgtcatcagacaagataaagaactagtt 9587597  T
Q  106 tatcttgatttaagtactcaaacgattgtggagcttgcttacaaagaagtgaactgtattgaccggatagtcatatacaaggaaaacattcttccaattg 205  Q
    | |||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| |||||||| || ||||||| |||||||||||||||||    
T  9587596 tgtcttgatttaagtactcaaatgattgtggagcttgcttacaaagaagtgaattctattgatcggatagtaatgtacaagg-aaacattcttccaattg 9587498  T
Q  206 gaggaataagtatttagttatttttcttgttttcacctggagcaaaatgattgtggccattgggatattacattgtatgcgaagtgtcttgtcaattaga 305  Q
    |||||||||||| ||||||||||||         ||| |||| |||||||||||||  ||||||||||||| || ||| | |||||||||||||||| ||    
T  9587497 gaggaataagtaattagttattttt---------accaggagtaaaatgattgtggtgattgggatattaccttatatacaaagtgtcttgtcaatttga 9587407  T
Q  306 atctcggagattgattgaatctgtagcgggccattatccttgtatcgttgttgatgcttatgtccttctgtttttggctcatctgttgctgcttttctgg 405  Q
    ||  | ||||| | ||||||| ||||| ||||||| |||||||||||| | ||||| || |||  ||||| |||||||||||||| ||||| ||||||||    
T  9587406 attccagagatcgcttgaatcggtagcaggccattgtccttgtatcgtcgctgatgattctgtggttctg-ttttggctcatctggtgctg-ttttctgg 9587309  T
Q  406 tctgtggttg-ctgtttggcggtgggggttctggaagtttcttgggtcaatcccactgtttttctttgcagccttcaggcttgttttgtg 494  Q
    ||||  |||| ||||||  |  |||    |||||||||||| |||||| ||||||| |||||||| |||||| |||||||||||| ||||    
T  9587308 tctgctgttgcctgtttttc--tgg----tctggaagtttcctgggtcgatcccaccgtttttctgtgcagcgttcaggcttgttgtgtg 9587225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 290 - 483
Target Start/End: Complemental strand, 9606190 - 9605997
Alignment:
Q  290 tgtcttgtcaattagaatctcggagattgattgaatctgtagcgggccattatccttgtatcgttgttgatgcttatgtccttctgtttttggctcatct 389  Q
    ||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9606190 tgtcttgtcaattagaatctcggagattgcttgaatcggtagcgagccattatccttgtatcgttgctgatgcttatgtccttctgtttttggctcatct 9606091  T
Q  390 gttgctgcttttctggtctgtggttgctgtttggcggtgggggttctggaagtttcttgggtcaatcccactgtttttctttgcagccttcagg 483  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9606090 gttgctgcttttctggtctgtggttgctgtttggcggtgggggttctggaagtttcttgggtcaatcccactgtttttctgtgcagccttcagg 9605997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 6 - 396
Target Start/End: Complemental strand, 9602603 - 9602199
Alignment:
Q  6 caaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtaggtaagaaaggagaaatattcttcatcagaaaagataaagaactagtt 105  Q
    ||||||||| | |||||||  |||||||||| |||||||||||||||| || || | |||||||||||||||  |||||||| ||||||||||| |||||    
T  9602603 caaactctttaatgttggatcgttgtcttgcattgagcgtcctatcggggttgggatgaaaggagaaatatttgtcatcagagaagataaagaagtagtt 9602504  T
Q  106 tatcttgatttaagtactcaaacgattgtggagcttgcttacaaagaagtgaactgtatt-------gaccggatagtcatatacaaggaaaacattctt 198  Q
    | ||||||||||||||||||| || ||||||||||| |||||||||||||||| | ||||       || || ||| | |||||||||||||||||||||    
T  9602503 tgtcttgatttaagtactcaatcggttgtggagctttcttacaaagaagtgaattctattgatcgtcgatcgaatactaatatacaaggaaaacattctt 9602404  T
Q  199 ccaattggaggaataagtatttagttatttttcttgttttcacctgga-------gcaaaatgattgtggccattgggatattacattgtatgcgaagtg 291  Q
    ||||| ||||||||||||| |||||||||||||||||||||||| |||       ||||||||||||  |  ||||||||||||| |||||||| |||||    
T  9602403 ccaatcggaggaataagtaattagttatttttcttgttttcaccaggagcaaaatgcaaaatgattgcagtgattgggatattaccttgtatgcaaagtg 9602304  T
Q  292 tcttgtcaattagaatctcggagattgattgaatctgtagcgggccattatccttgtatcgttgttgatgcttatgtccttctgtttttggctcatctgt 391  Q
    ||||||||||| ||| | ||||||||  || |||| |||||||||||||||||||||||||| | |||||| ||| |  || |||||||||||||||||     
T  9602303 tcttgtcaattggaaccccggagatttcttaaatcggtagcgggccattatccttgtatcgtcgctgatgcatatatggttttgtttttggctcatctgg 9602204  T
Q  392 tgctg 396  Q
    |||||    
T  9602203 tgctg 9602199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 9569251 - 9569473
Alignment:
Q  6 caaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtaggtaagaaaggagaaatattcttcatcagaaaagataaagaactagtt 105  Q
    |||||||||| ||||||||  |||||||||| ||||||||||||||||||| || |  ||||||||||||||| ||||||||||||||||||| ||||||    
T  9569251 caaactcttccttgttggaccgttgtcttgcattgagcgtcctatcggagtggggacaaaaggagaaatattcgtcatcagaaaagataaagagctagtt 9569350  T
Q  106 tatcttgatttaagtactcaaacgattgtggagcttgcttacaaagaagtgaactgtattgaccggatagtcatatacaaggaaaacattcttccaattg 205  Q
    | | |||||||||||||||||| |||||||||||||| ||||||||||||||| | ||||||  ||||||| |||||||||||||| |||||||||||||    
T  9569351 tgtattgatttaagtactcaaatgattgtggagcttgtttacaaagaagtgaattctattgataggatagtaatatacaaggaaaatattcttccaattg 9569450  T
Q  206 gaggaataagtatttagttattt 228  Q
    |||||||||||| ||||||||||    
T  9569451 gaggaataagtaattagttattt 9569473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 213 - 558
Target Start/End: Original strand, 9569616 - 9569978
Alignment:
Q  213 aagtatttagttatttttcttgttttcacctggagcaaaatgattgtggccattgggatattacattgtatgcgaagtgtcttgtcaattagaatctcgg 312  Q
    ||||| |||||||||||||||||||||||  ||||||||||||||||||  ||||||||||||| |||||||| |||||||||||| |   |||||  ||    
T  9569616 aagtaattagttatttttcttgttttcacgaggagcaaaatgattgtggtgattgggatattaccttgtatgcaaagtgtcttgtctag--gaatcctgg 9569713  T
Q  313 agattgattgaatctgtagcgggccattatccttgtatcgttgttgatgcttatgtccttctgtttttggctcatc----------------------tg 390  Q
    |||||| || |||| |||||||||||||||||||||||||| | ||||||||||||  |||||| ||||||| |||                      ||    
T  9569714 agattgctttaatcggtagcgggccattatccttgtatcgtcgctgatgcttatgtggttctgt-tttggctaatccaggtctgtttttctggtctgctg 9569812  T
Q  391 ttgctgcttttctggtctgtggttgctgtttggcggtgggggttctggaagtttcttgggtcaatcccactgtttttctttgcagccttcaggcttgttt 490  Q
    ||||||  |||||||| ||||||| ||||||||| |||||||||||||||||||||| |||| ||||||| ||||||||  ||||||| |||||||||||    
T  9569813 ttgctgtctttctggtatgtggttactgtttggcagtgggggttctggaagtttcttcggtcgatcccaccgtttttctgggcagcctccaggcttgttt 9569912  T
Q  491 tgtgcgttttcctcgcgtggcctatcaaggtttgctgtagtcgtgttttcttctgtttgattggtgga 558  Q
    | ||||  |||||   |||||||  ||| |||| | |  |||||||||||||||||||||||||||||    
T  9569913 tttgcggcttcct--tgtggcctggcaaagtttaccgctgtcgtgttttcttctgtttgattggtgga 9569978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 54295099 - 54295006
Alignment:
Q  6 caaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtaggtaagaaaggagaaatattcttcatcagaaaagataaagaa 99  Q
    |||||| ||||||||||||  ||||||||  ||||||| |||||||||||| || | ||| || |||||||||||| | |||||||||||||||    
T  54295099 caaacttttcattgttggaccgttgtcttatgttgagcatcctatcggagtggggacgaagggggaaatattcttcgtaagaaaagataaagaa 54295006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 9571882 - 9571934
Alignment:
Q  38 ttgagcgtcctatcggagtaggtaagaaaggagaaatattcttcatcagaaaa 90  Q
    |||||| ||||||| |||| || | ||||||||||||||||||||| ||||||    
T  9571882 ttgagcatcctatcagagtggggacgaaaggagaaatattcttcataagaaaa 9571934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 169 - 236
Target Start/End: Original strand, 54291085 - 54291150
Alignment:
Q  169 cggatagtcatatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgtt 236  Q
    |||||| | ||||||||||||||||||||||| |||||| ||||  ||| ||| || |||||||||||    
T  54291085 cggataataatatacaaggaaaacattcttcccattggaagaat--gtaattaattgtttttcttgtt 54291150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 11 - 283
Target Start/End: Original strand, 29131372 - 29131643
Alignment:
Q  11 tcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtaggtaagaaaggagaaatattcttcatcagaaaagataaagaactagtttatct 110  Q
    ||||||||||||||   |||||| |||||||||||||||| ||||| || |  |||||||||||||||||| | ||||||||| ||||||||||||  ||    
T  29131372 tcttcattgttggaccattgtctggcgttgagcgtcctattggagtggggacaaaaggagaaatattcttcctaagaaaagatgaagaactagtttggct 29131471  T
Q  111 tgatttaagtactcaaacgattgtggagcttgcttacaaagaagtgaactgtattgaccggatagtcatatacaaggaaaacattcttccaattggagga 210  Q
    |||||||||||| ||||  |||| || ||||| |||||||| ||||     || |   |||||| | ||||||||||| |||||||||||||||||||||    
T  29131472 tgatttaagtacgcaaagaattgcggggcttggttacaaaggagtgggtcatactagtcggataataatatacaaggataacattcttccaattggagga 29131571  T
Q  211 ataagtatttagttatttttcttgttttcacctggagcaaaatgattgtggccattgggatattacattgtat 283  Q
    | |||||  ||||| || ||| |||||||||  |||| |||||||||| || ||||||| |||||| ||||||    
T  29131572 acaagtaagtagtt-ttcttcctgttttcactgggaggaaaatgattgcggtcattgggctattaccttgtat 29131643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 6 - 151
Target Start/End: Original strand, 29012891 - 29013036
Alignment:
Q  6 caaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtaggtaagaaaggagaaatattcttcatcagaaaagataaagaactagtt 105  Q
    |||||||||||||||||||  ||||||||||||| |||||||||||||||| || | ||||||||||||||||||||||||||||||| |||||||||||    
T  29012891 caaactcttcattgttggaccgttgtcttgcgttaagcgtcctatcggagtggggacgaaaggagaaatattcttcatcagaaaagatgaagaactagtt 29012990  T
Q  106 tatcttgatttaagtactcaaacgattgtggagcttgcttacaaag 151  Q
    |  |||||||| ||||| |||| ||||| |||| ||| ||| ||||    
T  29012991 tggcttgatttgagtacccaaatgattgaggaggttggttataaag 29013036  T

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Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 6 - 276
Target Start/End: Complemental strand, 32740733 - 32740480
Alignment:
Q  6 caaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtaggtaagaaaggagaaatattcttcatcagaaaagataaagaactagtt 105  Q
    |||||||||||||||||||   |||||| | ||| | |||||||| ||||| || | ||||||||||||||||||| | ||||||||| |||||||||||    
T  32740733 caaactcttcattgttggaccattgtctggtgttcaacgtcctattggagtggggacgaaaggagaaatattcttcctaagaaaagatgaagaactagtt 32740634  T
Q  106 tatcttgatttaagtactcaaacgattgtggagcttgcttacaaagaagtgaactgtattgaccggatagtcatatacaaggaaaacattcttccaattg 205  Q
    |  ||||||||| |||| |||| ||||| |||||||| ||||     |||             |||||| | |||||| |||| || ||||||| |||||    
T  32740633 tggcttgatttatgtacacaaaggattgcggagcttggttac----tagt-------------cggataataatatacgaggataatattcttcaaattg 32740551  T
Q  206 gaggaataagtatttagttatttttcttgttttcacctggagcaaaatgattgtggccattgggatattac 276  Q
    |||||| ||||| |||||| ||||||||||||||||  |||| |||||||||  || ||||||||||||||    
T  32740550 gaggaacaagtaattagttttttttcttgttttcactgggaggaaaatgatttcggtcattgggatattac 32740480  T

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Target: chr6; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 6 - 142
Target Start/End: Complemental strand, 29152148 - 29152012
Alignment:
Q  6 caaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtaggtaagaaaggagaaatattcttcatcagaaaagataaagaactagtt 105  Q
    |||||||||||| ||||||  |||| ||| ||||||||||||||||||||| || || || || ||||||||||| || ||||||||||||||| ||| |    
T  29152148 caaactcttcatggttggaccgttgccttacgttgagcgtcctatcggagtggggaaaaatggggaaatattctttataagaaaagataaagaagtagct 29152049  T
Q  106 tatcttgatttaagtactcaaacgattgtggagcttg 142  Q
    |   ||||| | |||||||||| ||||| ||||||||    
T  29152048 tggtttgatctgagtactcaaatgattgaggagcttg 29152012  T

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Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 32 - 142
Target Start/End: Original strand, 29124233 - 29124343
Alignment:
Q  32 cttgcgttgagcgtcctatcggagtaggtaagaaaggagaaatattcttcatcagaaaagataaagaactagtttatcttgatttaagtactcaaacgat 131  Q
    |||| ||||| |||||||| ||||| |||| ||| || |||||||||||||| ||||||||||||||||||| ||   ||||||| ||||| |||| |||    
T  29124233 cttgtgttgatcgtcctattggagtgggtatgaagggggaaatattcttcattagaaaagataaagaactagcttggtttgatttgagtacccaaatgat 29124332  T
Q  132 tgtggagcttg 142  Q
    || ||||||||    
T  29124333 tgaggagcttg 29124343  T

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Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 142
Target Start/End: Complemental strand, 32960752 - 32960616
Alignment:
Q  6 caaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtaggtaagaaaggagaaatattcttcatcagaaaagataaagaactagtt 105  Q
    ||||||||| |||||| ||   ||| |||| |||||||||||||| ||||| || ||||| || |||||||||||||| ||||||||| ||||| |||||    
T  32960752 caaactctttattgttagaccattgccttgtgttgagcgtcctatgggagtggggaagaagggggaaatattcttcataagaaaagatgaagaattagtt 32960653  T
Q  106 tatcttgatttaagtactcaaacgattgtggagcttg 142  Q
    |   |||||||  |||| |||| ||||||| ||||||    
T  32960652 ttgtttgatttgggtacccaaatgattgtgaagcttg 32960616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 99
Target Start/End: Original strand, 34281977 - 34282070
Alignment:
Q  6 caaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtaggtaagaaaggagaaatattcttcatcagaaaagataaagaa 99  Q
    ||||||||| || ||||||  |||| ||| ||||||||||||||||||||| || |  || || |||||||||||||| |||||||||||||||    
T  34281977 caaactctttatggttggaccgttgccttacgttgagcgtcctatcggagtggggacaaagggggaaatattcttcataagaaaagataaagaa 34282070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 34278466 - 34278373
Alignment:
Q  6 caaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtaggtaagaaaggagaaatattcttcatcagaaaagataaagaa 99  Q
    |||||||||||| ||||||  |||| ||| ||||||||||||||||||||| || |  || ||  ||||||||||||| | |||||||||||||    
T  34278466 caaactcttcatggttggaccgttgccttacgttgagcgtcctatcggagtggggacaaaggggaaaatattcttcataataaaagataaagaa 34278373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 302
Target Start/End: Original strand, 29145527 - 29145651
Alignment:
Q  178 atatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgttttcacctggagcaaaatgattgtggccattgggatattaca 277  Q
    |||||||||||| ||||||||||||||||||||  |||||  || || ||||||||||| |||||  |||  | ||||||||||   ||| |||||||||    
T  29145527 atatacaaggaatacattcttccaattggaggagcaagtagctaattgtttttcttgttatcaccaagaggtatatgattgtggttgttgagatattaca 29145626  T
Q  278 ttgtatgcgaagtgtcttgtcaatt 302  Q
    || ||||| || ||  |||||||||    
T  29145627 ttttatgcaaactggtttgtcaatt 29145651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 19697430 - 19697377
Alignment:
Q  64 aaaggagaaatattcttcatcagaaaagataaagaactagtttatcttgattta 117  Q
    |||||||||||||||||||| |||||  || |||||||||||| ||||||||||    
T  19697430 aaaggagaaatattcttcattagaaagaatgaagaactagtttgtcttgattta 19697377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 34258209 - 34258133
Alignment:
Q  70 gaaatattcttcatcagaaaagataaagaactagtttatcttgatttaagtactcaaacgattgtggagcttgctta 146  Q
    |||||||||||||| |||||||||||| |||||| ||   || |||| || || |||||||||| ||||||||||||    
T  34258209 gaaatattcttcataagaaaagataaaaaactagcttggtttaatttgagcacccaaacgattgaggagcttgctta 34258133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 142
Target Start/End: Complemental strand, 32744853 - 32744743
Alignment:
Q  32 cttgcgttgagcgtcctatcggagtaggtaagaaaggagaaatattcttcatcagaaaagataaagaactagtttatcttgatttaagtactcaaacgat 131  Q
    |||||||||| || ||||| ||||| ||||  || || |||||||||||||| ||||| ||| ||||||| | ||   ||||||| ||||| |||| |||    
T  32744853 cttgcgttgatcggcctattggagtgggtacaaagggggaaatattcttcataagaaacgatgaagaactggcttggtttgatttgagtacccaaatgat 32744754  T
Q  132 tgtggagcttg 142  Q
    || ||||||||    
T  32744753 tgaggagcttg 32744743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 286368 - 286324
Alignment:
Q  38 ttgagcgtcctatcggagtaggtaagaaaggagaaatattcttca 82  Q
    ||||||||||||| |||||||| |||||||| || ||||||||||    
T  286368 ttgagcgtcctattggagtagggaagaaaggtgatatattcttca 286324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 6 - 300
Target Start/End: Original strand, 42446396 - 42446690
Alignment:
Q  6 caaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtaggtaagaaaggagaaatattcttcatcagaaaagataaagaactagtt 105  Q
    ||||||| |||||||||||  ||||  ||| |||||||||||||||| ||| || | ||||||||||||||||||||| |||||||||  |||||||| |    
T  42446396 caaactcgtcattgttggaccgttgcattgtgttgagcgtcctatcgaagtggggatgaaaggagaaatattcttcattagaaaagatggagaactagct 42446495  T
Q  106 tatcttgatttaagtactcaaacgattgtggagcttgcttacaaagaagtgaactgtattgaccggatagtcatatacaaggaaaacattcttccaattg 205  Q
    |  ||||||||||||||  | | ||||| || ||||| ||| |||| || |     || ||  ||| || | ||||||||||||||||||||||||||||    
T  42446496 tggcttgatttaagtaccaagatgattgaggggcttggttataaaggagggggtcctactgctcgggtaataatatacaaggaaaacattcttccaattg 42446595  T
Q  206 gaggaataagtatttagttatttttcttgttttcacctggagcaaaatgattgtggccattgggatattacattgtatgcgaagtgtcttgtcaa 300  Q
    ||||||||| || ||| || |||||||||||||||||  |||  | ||||||||||   ||| |||||||| |||||| | ||||  ||||||||    
T  42446596 gaggaataattaattaattgtttttcttgttttcaccaagaggtatatgattgtggttcttgagatattaccttgtatacaaagtcccttgtcaa 42446690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 6 - 242
Target Start/End: Complemental strand, 39837 - 39601
Alignment:
Q  6 caaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtaggtaagaaaggagaaatattcttcatcagaaaagataaagaactagtt 105  Q
    ||||||||| | |||||||  |||||||||||||||||||||||||||||| || |  ||||| ||||| ||||||   ||||||||||| ||| ||| |    
T  39837 caaactctttactgttggaccgttgtcttgcgttgagcgtcctatcggagtggggacaaaaggggaaattttcttccaaagaaaagataatgaattagct 39738  T
Q  106 tatcttgatttaagtactcaaacgattgtggagcttgcttacaaag-aagtgaactgtattgac-cggatagtca-tatacaaggaaaacattcttccaa 202  Q
    |   ||||| ||||||| |||  |||||  ||||||| ||| |||| ||| |  |  |||  || |||||| ||| ||||||||||||||||||||  ||    
T  39737 tggtttgatctaagtacccaagtgattgaagagcttggttataaagcaaggggtccttat--actcggata-tcactatacaaggaaaacattcttgtaa 39641  T
Q  203 ttggaggaataagtatttagttatttttcttgttttcacc 242  Q
    ||| ||||||||||| ||| ||||||||||||||||||||    
T  39640 ttgaaggaataagtaattaattatttttcttgttttcacc 39601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 242
Target Start/End: Complemental strand, 33486 - 33250
Alignment:
Q  6 caaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtaggtaagaaaggagaaatattcttcatcagaaaagataaagaactagtt 105  Q
    ||||||||||| |||||||  ||||||||||||||||||||||||| |||| || | |||||| ||||| ||||||   || |||||||| ||| ||| |    
T  33486 caaactcttcactgttggaccgttgtcttgcgttgagcgtcctatcagagtggggacgaaaggggaaattttcttccaaaggaaagataatgaattagct 33387  T
Q  106 tatcttgatttaagtactcaaacgattgtggagcttgcttacaaag-aagtgaactgtattgac-cggatagtca-tatacaaggaaaacattcttccaa 202  Q
    |   ||||| ||||||| |||  |||||  ||||||| ||| |||| ||| |  |  |||  || |||||| ||| |||||||||||||||||||| | |    
T  33386 tggtttgatctaagtacccaagtgattgaagagcttggttataaagcaaggggtccttat--actcggata-tcactatacaaggaaaacattcttgcca 33290  T
Q  203 ttggaggaataagtatttagttatttttcttgttttcacc 242  Q
    ||| ||||||||||| ||| ||||||||| ||||||||||    
T  33289 ttgaaggaataagtaattaattatttttcatgttttcacc 33250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 214
Target Start/End: Original strand, 43323021 - 43323054
Alignment:
Q  181 tacaaggaaaacattcttccaattggaggaataa 214  Q
    |||||||||||||| |||||||||||||||||||    
T  43323021 tacaaggaaaacatgcttccaattggaggaataa 43323054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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