View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1689-Insertion-8 (Length: 405)
Name: NF1689-Insertion-8
Description: NF1689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1689-Insertion-8 |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 8 - 405
Target Start/End: Original strand, 51121910 - 51122308
Alignment:
| Q |
8 |
tagaataggaaaaatttagagaatgttttctcctttgtatagtgattgtgttttaaatgtcttgccttttcactttgcaagtaaatctttccttgatgtt |
107 |
Q |
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| T |
51121910 |
tagaataggaaaaatttagagaatgttttctaatttgtatagtgattgtgttttaaatgtcttgccttttcactttgcaggtaaatctttccttgatgtt |
51122009 |
T |
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| Q |
108 |
gtctggtatgtcatttcatcttatcagtatatggtgcctgtgttgctttctcagtatttaattttatatactttattgtctaggaagctgcagctttttg |
207 |
Q |
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| T |
51122010 |
gtctggtatgtcatttcatcttatcagtatatggtgcttgtgttgctttctcagtatttaattttatatactttattgtctaggaagctgcagctttttg |
51122109 |
T |
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| Q |
208 |
tcacatgattttggctaatggat-aaaaataattgattgtctcaatttattgcatatttggatgatatttcctctacatcctaagggaaataatcctttt |
306 |
Q |
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| T |
51122110 |
tcacatgattttggctaatggataaaaaataattgattgtctcaatttattgcatatttggatgatatttcctccacatcctaagggaaataatcctttt |
51122209 |
T |
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| Q |
307 |
ttcccttataaaaatgtatgtcttgtctttgcttgctatgttgttttactcttgtataaattataggatttgtttgtgacatggtatatatttaagttt |
405 |
Q |
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| T |
51122210 |
ttcccttataaaaatgtatgccttgtctttgcttgctatgttgctttactcctgtataaattataagatttgtttgtgacatggtatatatttaagttt |
51122308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 153; Significance: 6e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 97 - 285
Target Start/End: Complemental strand, 39016718 - 39016527
Alignment:
| Q |
97 |
tccttgatgttgtctggtatgtcatttcatcttatcagtata--tggtgcctgtgttgctttctcagtatttaattttatatactttattgtctaggaag |
194 |
Q |
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| T |
39016718 |
tccttgatgttgtctggtatgtcatttcatcttatcagaataaatggtgcctgtgttgctttctcagtatttaattttatatactttattgtctaggaag |
39016619 |
T |
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| Q |
195 |
ctgcagctttttgtcacatgattttggctaatggata-aaaataattgattgtctcaatttattgcatatttggatgatatttcctctacat |
285 |
Q |
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| T |
39016618 |
ctgcagttttttgtcacatgattttggctaatggataaaaaataattgattgtctcaattcattgcatatttggatgatctttcctccacat |
39016527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 293 - 398
Target Start/End: Complemental strand, 39016478 - 39016371
Alignment:
| Q |
293 |
gaaataatccttttttcccttataaaaatgtatgtcttgtctttgcttgctat--gttgttttactcttgtataaattataggatttgtttgtgacatgg |
390 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||| |||||||||||||||||||| ||||||||||| |
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| T |
39016478 |
gaaataatccttttttcccttataaaaatgtatgccttgtctttgcttgctatacactattttactcctgtataaattataggatttgcttgtgacatgg |
39016379 |
T |
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| Q |
391 |
tatatatt |
398 |
Q |
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| T |
39016378 |
tatatatt |
39016371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 323 - 398
Target Start/End: Original strand, 30072729 - 30072804
Alignment:
| Q |
323 |
tatgtcttgtctttgcttgctatgttgttttactcttgtataaattataggatttgtttgtgacatggtatatatt |
398 |
Q |
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| T |
30072729 |
tatgccttgtctttgcttgctatgctgttttactcttgtataaattataggatttgcttgtgacatggtatatatt |
30072804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 336 - 405
Target Start/End: Original strand, 30369309 - 30369378
Alignment:
| Q |
336 |
tgcttgctatgttgttttactcttgtataaattataggatttgtttgtgacatggtatatatttaagttt |
405 |
Q |
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| T |
30369309 |
tgcttgctatgttgttttactcctgtataaattataggatttgcttgtgacatggtatatatttaagttt |
30369378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 45245966 - 45246042
Alignment:
| Q |
23 |
ttagagaatgttttctcctttgtatagtgattgtgttttaaatgtcttgccttttcactttgcaagtaaatctttcc |
99 |
Q |
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| T |
45245966 |
ttagagaatgttttctcttttgtatattgattgtgttttaaatgtcttgccttttcactctgcaggtatatgtttcc |
45246042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 390
Target Start/End: Original strand, 30013026 - 30013092
Alignment:
| Q |
328 |
cttgtctttgcttgctat----gttgttttactcttgtataaattataggatttgtttgtgacatgg |
390 |
Q |
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| T |
30013026 |
cttgtctttgcttgctatatatgttgttttactcctgtataaattataggatttgcttgtgacatgg |
30013092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 336 - 405
Target Start/End: Original strand, 38827431 - 38827500
Alignment:
| Q |
336 |
tgcttgctatgttgttttactcttgtataaattataggatttgtttgtgacatggtatatatttaagttt |
405 |
Q |
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| T |
38827431 |
tgcttgctatgttgttttactcctgtataaattataggatttgcttgtgacatggtatatatttaagttt |
38827500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 48885966 - 48886017
Alignment:
| Q |
29 |
aatgttttctcctttgtatagtgattgtgttttaaatgtcttgccttttcac |
80 |
Q |
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| T |
48885966 |
aatgttttctcctttgtatagtgattgtcttttaaatgtctttccttttcac |
48886017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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