View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1689-Insertion-9 (Length: 617)

Name: NF1689-Insertion-9
Description: NF1689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1689-Insertion-9
NF1689-Insertion-9
[»] chr3 (7 HSPs)
chr3 (308-611)||(42550848-42551151)
chr3 (8-181)||(42551279-42551452)
chr3 (347-556)||(42518973-42519182)
chr3 (347-587)||(1240752-1240992)
chr3 (8-81)||(42518603-42518676)
chr3 (215-256)||(42551203-42551244)
chr3 (8-82)||(1240281-1240355)
[»] chr5 (4 HSPs)
chr5 (347-594)||(18235185-18235432)
chr5 (347-557)||(41972385-41972595)
chr5 (8-92)||(18234757-18234841)
chr5 (8-82)||(41971911-41971985)


Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 308 - 611
Target Start/End: Complemental strand, 42551151 - 42550848
Alignment:
Q  308 ttatgaataaacatccgaattaaataacaataatgttaattacctgaatagcacatcctattccaaacccaagtaacatgcgaccaagaatgagcatcca 407  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42551151 ttatgaataaacatccgaagtaaataacaataatgttaattacctgaatagcacatcctattccaaacccaagtaacatgcgaccaagaatgagcatcca 42551052  T
Q  408 aacctcttgagcaaaaccattcaaggcagcaccagcaagaaaaagcacacctccagaaatcatggtgagacgccttccaaacgatcgagttactgtggat 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42551051 aacctcttgagcaaaaccattcaaggcagcaccagcaagaaaaagcacacctccagaaatcatggtgagacgccttccaaacgatcgagttactgtggat 42550952  T
Q  508 gccccaagtgatgctacaagagcagccaaatacaaagaggaggtaaacaatgttaacgtttggctatcgaatctgcagtactggttggtagaaggtttta 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42550951 gccccaagtgatgctacaagagcagccaaatacaaagaggaggtaaacaatgttaacgtttggctatcgaatctgcagtactggttggtagaaggtttta 42550852  T
Q  608 tagt 611  Q
    ||||    
T  42550851 tagt 42550848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 42551452 - 42551279
Alignment:
Q  8 attgccaattgaaacatcatattaagagctcctctgtaattgtatggagcaacttcagacacgtatattggcacactctatcaaagaaacaaaaagaaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42551452 attgccaattgaaacatcatattaagagctcctctgtaattgtatggagcaacttcagacacgtatattggcacactctatcaaagaaacaaaaagaaat 42551353  T
Q  108 taacattaattgtgacctaagtatattgtgaaacctataaatattaaagagatacacactaatgttgggtatgc 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42551352 taacattaattgtgacctaagtatattgtgaaacctataaatattaaagagatacacactaatgttgggtatgc 42551279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 347 - 556
Target Start/End: Original strand, 42518973 - 42519182
Alignment:
Q  347 ttacctgaatagcacatcctattccaaacccaagtaacatgcgaccaagaatgagcatccaaacctcttgagcaaaaccattcaaggcagcaccagcaag 446  Q
    |||||||  ||||||||||||||||||| ||||| |||||||| |||| |   |||||||| || | || ||| || ||||||| |||||| || || ||    
T  42518973 ttacctggttagcacatcctattccaaaaccaagcaacatgcggccaacataaagcatccacactttttcagcgaatccattcatggcagctccggcgag 42519072  T
Q  447 aaaaagcacacctccagaaatcatggtgagacgccttccaaacgatcgagttactgtggatgccccaagtgatgctacaagagcagccaaatacaaagag 546  Q
    |||||| ||||| ||||| | |||||| ||||| ||||||||   || |||||| |||||||| ||||| || || |||||||| |||||||||||||||    
T  42519073 aaaaagaacaccaccagagagcatggtaagacgtcttccaaagattctagttacagtggatgctccaagagaagccacaagagcggccaaatacaaagag 42519172  T
Q  547 gaggtaaaca 556  Q
    || |||||||    
T  42519173 gatgtaaaca 42519182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 347 - 587
Target Start/End: Original strand, 1240752 - 1240992
Alignment:
Q  347 ttacctgaatagcacatcctattccaaacccaagtaacatgcgaccaagaatgagcatccaaacctcttgagcaaaaccattcaaggcagcaccagcaag 446  Q
    |||||||  ||||||||||||||||||| ||||| |||||||| |||| |   |||||||| || | || ||| || |||||||  ||||| ||||| ||    
T  1240752 ttacctggttagcacatcctattccaaaaccaagcaacatgcggccaacataaagcatccacactttttcagcgaatccattcatagcagctccagcgag 1240851  T
Q  447 aaaaagcacacctccagaaatcatggtgagacgccttccaaacgatcgagttactgtggatgccccaagtgatgctacaagagcagccaaatacaaagag 546  Q
    |||||| ||||| ||||| | |||||| ||| | ||||||||   || |||| | |||||||| ||||| || || |||||||| |||||||||||||||    
T  1240852 aaaaagaacaccaccagagagcatggtaagatgtcttccaaagattctagttgcggtggatgctccaagagaagccacaagagcggccaaatacaaagag 1240951  T
Q  547 gaggtaaacaatgttaacgtttggctatcgaatctgcagta 587  Q
    || |||||||| ||||  || || || |||||| |||||||    
T  1240952 gatgtaaacaacgttagtgtctgactgtcgaatttgcagta 1240992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 42518603 - 42518676
Alignment:
Q  8 attgccaattgaaacatcatattaagagctcctctgtaattgtatggagcaacttcagacacgtatattggcac 81  Q
    ||||||||||| |||||||| |||||||||||||| || ||||| ||||||||||||||||  || ||||||||    
T  42518603 attgccaattggaacatcatgttaagagctcctctatacttgtagggagcaacttcagacatatagattggcac 42518676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 42551244 - 42551203
Alignment:
Q  215 ttgtgttttcttacctaataaaagagaacaaggatgagttct 256  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  42551244 ttgtgttttcttacctaataaaagagaacaaggatgagttct 42551203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 1240281 - 1240355
Alignment:
Q  8 attgccaattgaaacatcatattaagagctcctctgtaattgtatggagcaacttcagacacgtatattggcaca 82  Q
    |||| |||||| |||||||| |||||||||||||| || ||||| |||||||| || ||||  || |||||||||    
T  1240281 attgacaattggaacatcatgttaagagctcctctatacttgtagggagcaacctcggacagatagattggcaca 1240355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 1e-58; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 347 - 594
Target Start/End: Original strand, 18235185 - 18235432
Alignment:
Q  347 ttacctgaatagcacatcctattccaaacccaagtaacatgcgaccaagaatgagcatccaaacctcttgagcaaaaccattcaaggcagcaccagcaag 446  Q
    |||||||| |||||||||| || || || ||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  18235185 ttacctgattagcacatccaataccgaatccaagtaacatacgaccaacaatgagcatccaaacctcttgagcaaagccattcatggcagcaccagcaag 18235284  T
Q  447 aaaaagcacacctccagaaatcatggtgagacgccttccaaacgatcgagttactgtggatgccccaagtgatgctacaagagcagccaaatacaaagag 546  Q
    |||||| ||||| ||||||| |||||||| ||| ||||||| |  ||||||||     || |||||||| ||||| | |||||||||||  |||||||||    
T  18235285 aaaaagaacaccaccagaaagcatggtgatacgtcttccaagcactcgagttagccacgacgccccaagagatgcgataagagcagccacgtacaaagag 18235384  T
Q  547 gaggtaaacaatgttaacgtttggctatcgaatctgcagtactggttg 594  Q
    || || || ||||||||||||||||| |||||| ||||||||||||||    
T  18235385 gatgtgaataatgttaacgtttggctgtcgaatttgcagtactggttg 18235432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 347 - 557
Target Start/End: Original strand, 41972385 - 41972595
Alignment:
Q  347 ttacctgaatagcacatcctattccaaacccaagtaacatgcgaccaagaatgagcatccaaacctcttgagcaaaaccattcaaggcagcaccagcaag 446  Q
    |||||||  ||||||||||||||||||| ||||| |||||||| |||| |   |||||||| || | || ||| || |||||||  ||||| ||||| ||    
T  41972385 ttacctggttagcacatcctattccaaaaccaagcaacatgcggccaacataaagcatccacactttttcagcgaatccattcatagcagctccagcgag 41972484  T
Q  447 aaaaagcacacctccagaaatcatggtgagacgccttccaaacgatcgagttactgtggatgccccaagtgatgctacaagagcagccaaatacaaagag 546  Q
    |||||| ||||| ||||| | |||||| ||||| ||||||||   || |||||| |||||||| ||||| ||  | |||||||| |||||||||||||||    
T  41972485 aaaaagaacaccaccagagagcatggtaagacgtcttccaaagattctagttacggtggatgctccaagagaatccacaagagcggccaaatacaaagag 41972584  T
Q  547 gaggtaaacaa 557  Q
    || ||||||||    
T  41972585 gatgtaaacaa 41972595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 18234757 - 18234841
Alignment:
Q  8 attgccaattgaaacatcatattaagagctcctctgtaattgtatggagcaacttcagacacgtatattggcacactctatcaaa 92  Q
    ||||||||||| |||||||| |||||||||||||| || || || ||||| || ||||| || || ||||||||||||| |||||    
T  18234757 attgccaattggaacatcatgttaagagctcctctatacttatacggagccacctcagaaacataaattggcacactctgtcaaa 18234841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 41971911 - 41971985
Alignment:
Q  8 attgccaattgaaacatcatattaagagctcctctgtaattgtatggagcaacttcagacacgtatattggcaca 82  Q
    |||| |||||| |||||||| |||||||||||||| || ||||| |||||||| |||||||  || |||||||||    
T  41971911 attgacaattggaacatcatgttaagagctcctctatacttgtagggagcaacctcagacagatagattggcaca 41971985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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