View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16890_high_10 (Length: 342)

Name: NF16890_high_10
Description: NF16890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16890_high_10
NF16890_high_10
[»] chr2 (1 HSPs)
chr2 (9-342)||(12865977-12866312)


Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 9 - 342
Target Start/End: Complemental strand, 12866312 - 12865977
Alignment:
Q  9 gaagaatatggctgatcaagtgacatatataatccctatttatgaaatggagttaatannnnnnnnn-aacattacggttttacaaccctagtagattga 107  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||    
T  12866312 gaagaatatggttgatcaagtgacatatataatccctatttatgaaatggagttaatattttttttttaacattacggttttacaaccctagtagattga 12866213  T
Q  108 gtgtgaaaatattttacgtggaatttcaaatctccacacttttt--ctctttgcgtgtgtttatttgagtttgtatattagtttctaaatcaataaacaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12866212 gtgtgaaaatattttacgtggaatttcaaatctccacactttttttctctttgcgtgtgtttatttgagtttgtatattagtttctaaatcaataaacaa 12866113  T
Q  206 aggaaaattagttcaaataacctagtaatatctaaattagattagagtcatcaaaattgtaaaaatatattagatttatttataatgggcttacccaata 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12866112 aggaaaattagttcaaataacctagtaatatctaaattagattagagtcatcaaaattgtaaaaatatattagatttatttataatgggcttacccaata 12866013  T
Q  306 gagtagacccctaatcttagtagttgatggtacatat 342  Q
    |||| ||||||||||||||||||||||||||||||||    
T  12866012 gagt-gacccctaatcttagtagttgatggtacatat 12865977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University