View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16890_high_11 (Length: 338)
Name: NF16890_high_11
Description: NF16890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16890_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 28013778 - 28014091
Alignment:
| Q |
1 |
aatctctgctatacaagtgctggtaagcttcttttccctgtttcattcttgtccactttgttctttctgaaccatttctaatataatctacaatcattaa |
100 |
Q |
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| T |
28013778 |
aatctctgctatacaagtgctggtaagcttcttttccacgtttcattcttttccaatttgttctttctgaaccatttctaatataatctacaatcattaa |
28013877 |
T |
|
| Q |
101 |
tagttctcttttgtttattttttcttattctcaggagtcaggatcttaggccaactagttggaaaaactctcctcttctatggtaattctcatctctgct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
28013878 |
tagttctcttttgtttattttttcttattctcaggagtcaggatcttaggccaactaattggaaaaactctcctcttctatggtaattctcatctctggt |
28013977 |
T |
|
| Q |
201 |
acatttcgtgcttgtattgtattcttcatgcatgtatatgtctgcaattgtcaccgctgataatattagtccatattttagttccaaaaatataaatgtt |
300 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28013978 |
acatttcgtgcttgtattgtattcttaatgcatgtatatgtctgcaattgtaaccgctgataatattagtccatattttagttccaaaaatataaatgtt |
28014077 |
T |
|
| Q |
301 |
tgctctccttgatg |
314 |
Q |
| |
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|||||||||||||| |
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| T |
28014078 |
tgctctccttgatg |
28014091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 192
Target Start/End: Complemental strand, 54960889 - 54960855
Alignment:
| Q |
158 |
gttggaaaaactctcctcttctatggtaattctca |
192 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
54960889 |
gttggaaaaactctcctcttctatggtaattctca |
54960855 |
T |
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