View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16890_high_12 (Length: 333)
Name: NF16890_high_12
Description: NF16890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16890_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 8122562 - 8122235
Alignment:
| Q |
1 |
aaatcaactatctttccttttcaatggtggaatcttacatatcaatgtgaattcaatattannnnnnnaagtgtactctttaagtgtactctctcacaaa |
100 |
Q |
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| T |
8122562 |
aaatcaactatctttccttttcaatggtggaatcttacatgtcaatgtgaattcaatattatttttttaagagtactcttttagtgtactctctcacaaa |
8122463 |
T |
|
| Q |
101 |
taattgaaatataagcatagtaaatatc-ataaattgtcatccaaaggaaccattcttattctttcaagccattcttttcaattctcgttacaattttat |
199 |
Q |
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| T |
8122462 |
taattgaaatataagcatagtaaatatttataaattgtcatctaaaccaaccattcttattctttcaagccattctttacaattctcgttacaatttcat |
8122363 |
T |
|
| Q |
200 |
tttagtttatgagtgagtatctttttacactcaacatgaaagaggaagtacttttatgctgttaatacgtttgtatgtggggatttttatttttccttgt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8122362 |
tttagtttatgagtgagtatctttttacactcaacatgaaagaggaagtacttttatgctgttaatacgtttgtatgtggggatttttatttttccttgt |
8122263 |
T |
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| Q |
300 |
aatattgtatgcgggtcttcatctcact |
327 |
Q |
| |
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||||||||||||||||||| |||||||| |
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| T |
8122262 |
aatattgtatgcgggtcttaatctcact |
8122235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 12880084 - 12880120
Alignment:
| Q |
91 |
ctctcacaaataattgaaatataagcatagtaaatat |
127 |
Q |
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| T |
12880084 |
ctctcacaagtaattgaaatataagcatagtagatat |
12880120 |
T |
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