View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16890_high_13 (Length: 333)
Name: NF16890_high_13
Description: NF16890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16890_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 31264374 - 31264693
Alignment:
| Q |
13 |
aatatcaaagaatgattcgcaataaatattggctcnnnnnnnnnnnngcttgtatgagcaattaatataggagttttacaaaagggaggttgtaagtaaa |
112 |
Q |
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| T |
31264374 |
aatatcaaagaatgattcgcaataaatattggctcaaaaaagaaaaagcttgtatgagcaattaatataggagttttacaaaagggaggttgtaagtaaa |
31264473 |
T |
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| Q |
113 |
tgcagaatgggaaagaaataggtcccatttaaatggaccccaatgggtctttttggagctttcttaagtaaagtgtatgggtactttccataatctaaaa |
212 |
Q |
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| T |
31264474 |
tgcagaatgggtaagaaataggtcccatttaaatggaccccaatgggtctttttggagctttcttaagtaaagtgtatgggtactttccataatctaaaa |
31264573 |
T |
|
| Q |
213 |
ttctcattgcctatatcaagttactaatgagaggttgaaagcagcttccaatattccgagattaattatgcaaacatgtttcaatctaggttattagggt |
312 |
Q |
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| T |
31264574 |
ttctcattgcctatatcaagttactaatgagaggttgaaagcagcttccaatattccgagattaattatgcagacatgtttcaatctaggttattagggt |
31264673 |
T |
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| Q |
313 |
tacctaaaccatgtcttatg |
332 |
Q |
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| T |
31264674 |
tacctaaaccatgtcttatg |
31264693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 177 - 294
Target Start/End: Original strand, 31265374 - 31265491
Alignment:
| Q |
177 |
taagtaaagtgtatgggtactttccataatctaaaattctcattgcctatatcaagttactaatgagaggttgaaagcagcttccaatattccgagatta |
276 |
Q |
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| T |
31265374 |
taagtagagtgaatgggtactttccacaatctaaaatttccattgtccacatcaagttactaacgaaaggttgaaagccacttccaatatgccaagatta |
31265473 |
T |
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| Q |
277 |
attatgcaaacatgtttc |
294 |
Q |
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| T |
31265474 |
ataatgcaaacatgtttc |
31265491 |
T |
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