View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16890_high_15 (Length: 323)
Name: NF16890_high_15
Description: NF16890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16890_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 40111962 - 40111653
Alignment:
| Q |
1 |
acatatagggcacataaggtggattctccccgcccaacagattttttctccataagcatgatccaattaacgacatgcttaagggatttgagttccttac |
100 |
Q |
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| T |
40111962 |
acatatagggcacataaggtggattctccccgcccaacagattttttctccatacgcatgatccaattaacgacatgcttaagggatttgagttccttac |
40111863 |
T |
|
| Q |
101 |
cacttggaccaattcattgttgattaatcttaatatgcttttctaatcgtggcttttgtagaagaaagaagtctgtattatttgtatctctcaataccat |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40111862 |
cacttggaacaattcattgttgattaatcttaatatgcttttctaatcgtggcttttgtagaagaaagaagtctgtattatttgtatctctaaataccat |
40111763 |
T |
|
| Q |
201 |
atgaaaaattttggatttttccatggggttattttggatatttaatagaacgtatacattgtttattagtgtgggtggatccttggttccactcgaaagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40111762 |
atgaaaaattttggatttttccatggggttattttggatatttaatagaacgtatacattgtttattagtgtgggtggatccttggttccactcgaaagt |
40111663 |
T |
|
| Q |
301 |
atgtgtattt |
310 |
Q |
| |
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|||||||||| |
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| T |
40111662 |
atgtgtattt |
40111653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 43460271 - 43460320
Alignment:
| Q |
73 |
acatgcttaagggatttgagttccttaccacttggaccaattcattgttg |
122 |
Q |
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||||||||||||| || ||| ||||||||||||||||||| |||||||| |
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| T |
43460271 |
acatgcttaaggggttcaagtcccttaccacttggaccaatccattgttg |
43460320 |
T |
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