View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16890_high_16 (Length: 313)
Name: NF16890_high_16
Description: NF16890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16890_high_16 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 9 - 313
Target Start/End: Complemental strand, 30807488 - 30807185
Alignment:
| Q |
9 |
gaagaatatgatcatgtaaagcaagtgaagcttcaacccctgatgaggaagtatgaattgatgataatggacgaatatcaaagaatcatttatcacttat |
108 |
Q |
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| T |
30807488 |
gaagaaaatgatcatgtaaagcaagtgaagcttcaacccctgatgaggaagtatgaattgatgatgatggacgaatatcaaagaatcatttatcacttat |
30807389 |
T |
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| Q |
109 |
caaaattgctttatgtagtgaaccagatgaaagcatgtggagaaactattactgatcaacaagttgttgcaaaggtaataagaactttgacctcaaagtt |
208 |
Q |
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| T |
30807388 |
caaaattgctttatgtagtgaaccagatgaaagcatgtggagaaactatta-tgatcaacaagttgttgcaaaggtaataagaactttgacctcaaagtt |
30807290 |
T |
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| Q |
209 |
tgatttcataattgtaaccatttaaaagtccaaggatgttaaaactatgaagaaagaaaaacttcaatcctctctagaagtacatgagatgctggtgatt |
308 |
Q |
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| T |
30807289 |
tgatttcataattgtaaccatttaaaagtccaaggatgttaaaactatgaagaaagaaaaacttcaatcctctctagaagtacatgagatgctggtgatt |
30807190 |
T |
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| Q |
309 |
gaaat |
313 |
Q |
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| T |
30807189 |
gaaat |
30807185 |
T |
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Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 151 - 312
Target Start/End: Complemental strand, 18679381 - 18679220
Alignment:
| Q |
151 |
aaactattactgatcaacaagttgttgcaaaggtaataagaactttgacctcaaagtttgatttcataattgtaaccatttaaaagtccaaggatgttaa |
250 |
Q |
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| T |
18679381 |
aaactattactaatcaacaagtcgttcgaaaggtaatgagatctttgaccacaaagtttgatttcaaagttatagccattgaagaatccaatgatattaa |
18679282 |
T |
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| Q |
251 |
aactatgaagaaagaaaaacttcaatcctctctagaagtacatgagatgctggtgattgaaa |
312 |
Q |
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| T |
18679281 |
aactatgaagattgaagaacttcaatcctctctagaagcacatgagatactagtgattgaaa |
18679220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 312
Target Start/End: Original strand, 36020678 - 36020746
Alignment:
| Q |
244 |
atgttaaaactatgaagaaagaaaaacttcaatcctctctagaagtacatgagatgctggtgattgaaa |
312 |
Q |
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| T |
36020678 |
atgttaagacaatgaagattgaaaaacttcaatcatctcttgaagcgcatgagatgctggtgattgaaa |
36020746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 312
Target Start/End: Original strand, 21462891 - 21462966
Alignment:
| Q |
237 |
tccaaggatgttaaaactatgaagaaagaaaaacttcaatcctctctagaagtacatgagatgctggtgattgaaa |
312 |
Q |
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| T |
21462891 |
tccaaggatgtcaaaactctgaagattgaggaacttcaatcatcacttgaagcacatgagatgttggtgattgaaa |
21462966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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