View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16890_high_18 (Length: 305)
Name: NF16890_high_18
Description: NF16890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16890_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 4 - 290
Target Start/End: Original strand, 31088715 - 31089001
Alignment:
| Q |
4 |
gtcacatagaggatctttatatatacttggttaacgtccatttggcgccttccaccattttctgttgcaaaacacttgtgtttcattgttttgtagatct |
103 |
Q |
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| T |
31088715 |
gtcacatagaggatctttatatatacttggttaacgtccatttggtgccttccaccattttctgttgcaaaacacttgtgtttcattgttatgtagatct |
31088814 |
T |
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| Q |
104 |
tcctttgctcaaaactctaccattgtttaatatttatttcgaagttggggaggatttcatgaaacttatctctgggtgtcccgaattggaggattggaaa |
203 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31088815 |
tcctatgctcaaaactctacaattgtttaatatttatttcgaagttgggaaggatttcatgaaacttatctctgggtgtcccgaattggaggattggaaa |
31088914 |
T |
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| Q |
204 |
actacaattgttacacagagaacggttatagagtcctacggtacattgaattgaaccatcattgaagttgatcaatgccgaaatcat |
290 |
Q |
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| T |
31088915 |
actacaattgttacacacagaacggttatagagtcctacggtacattgaattgaaccatcattgaagttgatcaatgccgaaatcat |
31089001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 82 - 212
Target Start/End: Original strand, 31114822 - 31114952
Alignment:
| Q |
82 |
tgtttcattgttttgtagatcttcctttgctcaaaactctaccattgtttaatatttatttcgaagttggggaggatttcatgaaacttatctctgggtg |
181 |
Q |
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| T |
31114822 |
tgtttcattgttctgttgaacttccttttctcaaaaccctacggttgtgtgatatttatttcgaagttgaggaagatttcacgaaacttctctctaggtg |
31114921 |
T |
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| Q |
182 |
tcccgaattggaggattggaaaactacaatt |
212 |
Q |
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| T |
31114922 |
tcctgaattggagtattgaaaacctacaatt |
31114952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 82 - 207
Target Start/End: Original strand, 19805702 - 19805827
Alignment:
| Q |
82 |
tgtttcattgttttgtagatcttcctttgctcaaaactctaccattgtttaatatttatttcgaagttggggaggatttcatgaaacttatctctgggtg |
181 |
Q |
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|||||||| ||| ||| |||||||||||||| ||||| ||| | ||||||||||| |||| ||| | |||||||||||||||||| | |||||||| |
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| T |
19805702 |
tgtttcatggttctgttgatcttcctttgctgaaaaccctaactatgtttaatattcatttggaaaatatcgaggatttcatgaaacttctttctgggtg |
19805801 |
T |
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| Q |
182 |
tcccgaattggaggattggaaaacta |
207 |
Q |
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|||| ||||||| ||| |||||||| |
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| T |
19805802 |
tcccatattggagaatttgaaaacta |
19805827 |
T |
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