View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16890_high_2 (Length: 485)
Name: NF16890_high_2
Description: NF16890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16890_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 9828428 - 9828052
Alignment:
| Q |
1 |
ccatgttggtgatatgtatatataccaatgggggcggagactagttttacctctctcacccccaaacaccgattattccccacaaaaatcccgaacatgt |
100 |
Q |
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| T |
9828428 |
ccatgttggtgatatgtatatataccaatgggggtggagattagttttacctctctcacccccaacccccgagtatcccgcacagaaaacccgaacatgt |
9828329 |
T |
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| Q |
101 |
actccggt-gggtaggaattttgatctccatccccatctctggtagggatcgagtttcccctccatgcacccatcccctgatggtattttagtaatatca |
199 |
Q |
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| T |
9828328 |
actccggcagggttggaattttgatatccatccccgtctcttatagggatcgagtttccccaccatgcacccatcccctgatgggattttagtaatatca |
9828229 |
T |
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| Q |
200 |
catcgtttctcgtcttctaacatcaatagattaacaaataagtcatatgcaccttgttcttgagaagatggcacccgattgtgttctttattcctaagca |
299 |
Q |
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| T |
9828228 |
catcgtttctcgtcttctaacatcaatagattaacaaataagtcatatgcaccgtgttcttgagaagatgacacccgattgtgttctttattcctaagca |
9828129 |
T |
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| Q |
300 |
accgatcttccatcactctcattttaccctaaaacgaaaataatttaaaaatccgatctactatgagtattatctacc |
377 |
Q |
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| T |
9828128 |
accgatctaccatcactctcattttaccctaaaacgaaaataa-ttaaaaatccgacctactatgagtattatttacc |
9828052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 380 - 485
Target Start/End: Original strand, 9828323 - 9828428
Alignment:
| Q |
380 |
cggagtacatgttcgggatttttgtggggaataatcggtgtttgggggtgagagaggtaaaactagtctccacccccattggtatatatacatatcacca |
479 |
Q |
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| T |
9828323 |
cggagtacatgttcgggttttctgtgcgggatactcgggggttgggggtgagagaggtaaaactaatctccacccccattggtatatatacatatcacca |
9828422 |
T |
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| Q |
480 |
acatgg |
485 |
Q |
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| T |
9828423 |
acatgg |
9828428 |
T |
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