View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16890_high_6 (Length: 389)
Name: NF16890_high_6
Description: NF16890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16890_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 380
Target Start/End: Original strand, 49957918 - 49958280
Alignment:
| Q |
18 |
atagaataaacaaaacaatccgaaggtcatagtcagctcccaccaaaaccagttgaagatcttctaccacacttgaagcaagaaattacggattacaaaa |
117 |
Q |
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| T |
49957918 |
atagaataaacaaaacaatctgaaggtcatagtcagctcccaccaaaaccagttgaagatcttctaccacacttgaagcaagaaattacagattacaaaa |
49958017 |
T |
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| Q |
118 |
agatgatacgatgaatggacgaaaacatgatctaaagtatcatttaaccaagaccatttatcattcttaagagttaaagcggtgccaccaattaaaatta |
217 |
Q |
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| T |
49958018 |
agatgatacgatgaatggacgaaaacatgacctaaaatatcatttaaccaagacaatttatcatccttaagagttagagcggtgccaccaattaaaatta |
49958117 |
T |
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| Q |
218 |
ggaaatcccccatcatttcgtctttcctttattttcaaaaaagggccttctccatttaagcaccaaagacattactattaagttgttagagacattacaa |
317 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
49958118 |
ggaaatccctcatcatttcgtctttcctttattttcaaaaaagggcctcctccatttaagcaccaaagacattactattaagttgtgagagacattacat |
49958217 |
T |
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| Q |
318 |
gaaaagagatttctcatcccatgctatgcttttagttaaatcaatgatttttctattacgaat |
380 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
49958218 |
gaaaagagatttctcatcccatcttatgcttttagttaaatcaatgatttttctattacgaat |
49958280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 49957666 - 49957715
Alignment:
| Q |
18 |
atagaataaacaaaacaatccgaaggtcatagtcagctcccaccaaaacc |
67 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
49957666 |
atagaataaacaaaacaatccgaaggtcatagtcagcttccaccaaaacc |
49957715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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