View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16890_high_7 (Length: 357)
Name: NF16890_high_7
Description: NF16890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16890_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 31 - 353
Target Start/End: Original strand, 6867419 - 6867742
Alignment:
| Q |
31 |
gaaatacctagccctgctgatattgttgttgagctgtgaccagtgccaaaactatcaaattcactctcagagcgttttgtaaacccacttaatccatctt |
130 |
Q |
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| T |
6867419 |
gaaatacctagccctgctgatattgttgttgagctgtgaccagtgccaaaaatatcaaattcactctcagagcgttttgtaaacccacttaatccatctt |
6867518 |
T |
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| Q |
131 |
tctgcctcaaagtatgcatcttattccttctaccagtcagaattttatgtggatatgactgcaaaaattcacac-aagtgtcatcatcccctagaaagtc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
6867519 |
tctgcctcaaagtatgcatcttattccttctaccagtcagaattttatgtggatatgactgcaaaaattcacacaaagtcatatcatcccctagaaagtc |
6867618 |
T |
|
| Q |
230 |
aacccttcaaaaaataatcacctagtactaataggagagtagtatgatcaacctgatgacctacatcccacaagattttgtcaataggagcattgaaaac |
329 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6867619 |
aacccttcaaaaaataatcatctagtactaataggagagtagtatgatcaacctgatgacctacatcccacaagattttgtcaataggagcattgaaaac |
6867718 |
T |
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| Q |
330 |
ataatggagggcaacagtgagttc |
353 |
Q |
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|||||||||||||||||||||||| |
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| T |
6867719 |
ataatggagggcaacagtgagttc |
6867742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 58 - 197
Target Start/End: Complemental strand, 49145926 - 49145787
Alignment:
| Q |
58 |
gttgagctgtgaccagtgccaaaactatcaaattcactctcagagcgttttgtaaacccacttaatccatctttctgcctcaaagtatgcatcttattcc |
157 |
Q |
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||||| || ||||||||||||||| |||| ||||||||||||| ||||||||||| ||| ||||||| |||| |||| ||||||||||||| || |
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| T |
49145926 |
gttgaactatgaccagtgccaaaagaatcatattcactctcagaacgttttgtaaatccagacaatccattagtctgtctcatggtatgcatcttatccc |
49145827 |
T |
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| Q |
158 |
ttctaccagtcagaattttatgtggatatgactgcaaaaa |
197 |
Q |
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| T |
49145826 |
ttctaccagtaagtattttatgagggtatgactgcaaaaa |
49145787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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