View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16890_high_8 (Length: 346)
Name: NF16890_high_8
Description: NF16890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16890_high_8 |
 | |
|
| [»] scaffold0229 (1 HSPs) |
| | |
|
| [»] scaffold0245 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0229 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 264 - 580
Alignment:
| Q |
1 |
tgttggtagagctattgagaagggaacatttagtgagatgttggatccaagactgacagattggccagttgaagaggctatggggtttgctcagatggct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
264 |
tgttggtagagctattgagaagggaacatttagtgagatgttggatccaagactgacagattggccagttgaagaggctatggggtttgctcagatggct |
363 |
T |
|
| Q |
101 |
ataaggtgtgctgagttaaggaggaaagatagacctgatcttggtaaagagattatgcctgaacttaataggttatgagaacttgctgaaaataatgatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
364 |
ataaggtgtgctgagttaaggaggaaagatagacctgatcttggtaaagagattatgcctgaacttaataggttaagagaacttgctgaaaataatgatc |
463 |
T |
|
| Q |
201 |
accattatatgtttagtggatttacaagtccttctactcagagccaagtctctcttcagatggtatgtttctttctctacttattcattcttgcattgca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
464 |
accattatatgtttagtggatttacaagtccttctactcagagccaagtctctcttcagatggtatgtttctttctctacttattcattcttgcattgca |
563 |
T |
|
| Q |
301 |
taaccactgtttcagat |
317 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
564 |
taaccactgtttcagat |
580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 1274256 - 1274572
Alignment:
| Q |
1 |
tgttggtagagctattgagaagggaacatttagtgagatgttggatccaagactgacagattggccagttgaagaggctatggggtttgctcagatggct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1274256 |
tgttggtagagctattgagaagggaacatttagtgagatgttggatccaagactgacagattggccagttgaagaggctatggggtttgctcagatggct |
1274355 |
T |
|
| Q |
101 |
ataaggtgtgctgagttaaggaggaaagatagacctgatcttggtaaagagattatgcctgaacttaataggttatgagaacttgctgaaaataatgatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1274356 |
ataaggtgtgctgagttaaggaggaaagatagacctgatcttggtaaagagattatgcctgaacttaataggttaagagaacttgctgaaaataatgatc |
1274455 |
T |
|
| Q |
201 |
accattatatgtttagtggatttacaagtccttctactcagagccaagtctctcttcagatggtatgtttctttctctacttattcattcttgcattgca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1274456 |
accattatatgtttagtggatttacaagtccttctactcagagccaagtctctcttcagatggtatgtttctttctctacttattcattcttgcattgca |
1274555 |
T |
|
| Q |
301 |
taaccactgtttcagat |
317 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
1274556 |
taaccactgtttcagat |
1274572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: scaffold0245
Description:
Target: scaffold0245; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 72 - 317
Target Start/End: Original strand, 1 - 246
Alignment:
| Q |
72 |
aagaggctatggggtttgctcagatggctataaggtgtgctgagttaaggaggaaagatagacctgatcttggtaaagagattatgcctgaacttaatag |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1 |
aagaggctatggggtttgctcagatggctataaggtgtgctgagttaaggaggaaagatagacctgatcttggtaaagagattatgcctgaacttaatag |
100 |
T |
|
| Q |
172 |
gttatgagaacttgctgaaaataatgatcaccattatatgtttagtggatttacaagtccttctactcagagccaagtctctcttcagatggtatgtttc |
271 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
101 |
gttaagagaacttgctgaaaataatgatcaccattatatgtttagtggatttacaagtccttctactcagagccaagtctctcttcagatggtatgtttc |
200 |
T |
|
| Q |
272 |
tttctctacttattcattcttgcattgcataaccactgtttcagat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
201 |
tttctctacttattcattcttgcattgcataaccactgtttcagat |
246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 50439244 - 50439185
Alignment:
| Q |
8 |
agagctattgagaagggaacatttagtgagatgttggatccaagactgacagattggcca |
67 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||||| | | |||| ||||||||| |
|
|
| T |
50439244 |
agagctattgagaaaggaacatttactgagatgttggatcctacagtgactgattggcca |
50439185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University