View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16890_high_9 (Length: 343)
Name: NF16890_high_9
Description: NF16890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16890_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 6998442 - 6998109
Alignment:
| Q |
1 |
gaatcatctccatatttgacagaatctctaaaagcatcatctaactcaaataaccattcttttgtgaacaccataaggttactgcacccagagccaagaa |
100 |
Q |
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||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6998442 |
gaatcatctccatgtttgacagaatctctaaaagtatcatccaactcaaataaccattcttttgtgaacaccataaggttactgcacccagagccaagaa |
6998343 |
T |
|
| Q |
101 |
accatacctctttttgagcactactactcaaatcagctttagccaagagacacatctcttctcggccgtcatcaaattcagcataatttgaattttcttc |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6998342 |
accatacctctttttgagcactaatactcaaatcagctttagccaagagacacatctcttctcggccgtcatcaaattcagcataatttgaattttcttc |
6998243 |
T |
|
| Q |
201 |
ccagttgggacactcattatgattgtgtcctagcttatgaagaagtttgatgtcatttgaggatttgtgttacttagtggtagcatttccagtagcgact |
300 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6998242 |
ccagttgggacactcattatgatagtgtcctagcttatgaagaagtttgatgtcaattgaggatttgtgttgcttagtggtagcatttccagtagcgact |
6998143 |
T |
|
| Q |
301 |
gtgacaccattttcaatcaaactccaatattctt |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
6998142 |
gtgacaccattttcaatcaaactccaatattctt |
6998109 |
T |
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