View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16891_high_11 (Length: 334)

Name: NF16891_high_11
Description: NF16891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16891_high_11
NF16891_high_11
[»] chr6 (10 HSPs)
chr6 (249-324)||(13474599-13474674)
chr6 (246-314)||(14020900-14020968)
chr6 (246-324)||(14108643-14108721)
chr6 (156-221)||(13474814-13474879)
chr6 (254-324)||(14082946-14083016)
chr6 (156-221)||(14082786-14082851)
chr6 (156-199)||(13898039-13898082)
chr6 (46-90)||(14081904-14081948)
chr6 (159-204)||(13894977-13895022)
chr6 (188-221)||(14020729-14020762)
[»] chr8 (3 HSPs)
chr8 (36-90)||(8754138-8754192)
chr8 (36-89)||(10507236-10507289)
chr8 (10-38)||(10507392-10507420)


Alignment Details
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 249 - 324
Target Start/End: Complemental strand, 13474674 - 13474599
Alignment:
Q  249 ttggataacattaagaacctctgacttaaattttcatattttcttaaattaaattattagtcttaatcgattttta 324  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13474674 ttggataacattaagaacctctgacttcaattttcatattttcttaaattaaattattagtcttaattgattttta 13474599  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 246 - 314
Target Start/End: Original strand, 14020900 - 14020968
Alignment:
Q  246 taattggataacattaagaacctctgacttaaattttcatattttcttaaattaaattattagtcttaa 314  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14020900 taattggataacattaagaacctctgacttcaattttcatattttcttaaattaaattattagtcttaa 14020968  T

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Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 246 - 324
Target Start/End: Original strand, 14108643 - 14108721
Alignment:
Q  246 taattggataacattaagaacctctgacttaaattttcatattttcttaaattaaattattagtcttaatcgattttta 324  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||  |||||||    
T  14108643 taattggataacattaagaacctatgacttaaattttcatattttcttaaattgaattattagtcttaatttattttta 14108721  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 13474879 - 13474814
Alignment:
Q  156 cattcaagacattcttcctgttctttctgtcattcctgaggtaagtctatgttactgaacaatttt 221  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||| |||||    
T  13474879 cattcaagacattcttcttgttctttctgtcattcctgaggtaaaactatgttactgaaccatttt 13474814  T

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Target: chr6; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 254 - 324
Target Start/End: Original strand, 14082946 - 14083016
Alignment:
Q  254 taacattaagaacctctgacttaaattttcatattttcttaaattaaattattagtcttaatcgattttta 324  Q
    ||||||||||||||||||||| ||||| |||||||| | |||| |||||||||||||||||| ||||||||    
T  14082946 taacattaagaacctctgactcaaattctcatatttccataaactaaattattagtcttaattgattttta 14083016  T

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Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 14082786 - 14082851
Alignment:
Q  156 cattcaagacattcttcctgttctttctgtcattcctgaggtaagtctatgttactgaacaatttt 221  Q
    |||| ||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||| |||||    
T  14082786 catttaagacattcttcctgttctttctctcattcctgtggtaaatctatgttactgaaccatttt 14082851  T

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Target: chr6; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 13898082 - 13898039
Alignment:
Q  156 cattcaagacattcttcctgttctttctgtcattcctgaggtaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  13898082 cattcaagacattcttcctgttctttctgtcattcctgaggtaa 13898039  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 14081904 - 14081948
Alignment:
Q  46 aaattcagtgaagtcatgtttctgttgatgaacgagttctcactg 90  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||    
T  14081904 aaattcaatgaagtcatgtttctgttgatgaatgagttctcactg 14081948  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 13895022 - 13894977
Alignment:
Q  159 tcaagacattcttcctgttctttctgtcattcctgaggtaagtcta 204  Q
    ||||||||||||||| |||||||||| |||||||||||||| ||||    
T  13895022 tcaagacattcttcccgttctttctgccattcctgaggtaaatcta 13894977  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 221
Target Start/End: Original strand, 14020729 - 14020762
Alignment:
Q  188 ttcctgaggtaagtctatgttactgaacaatttt 221  Q
    ||||||||||||||||||||||||||||||||||    
T  14020729 ttcctgaggtaagtctatgttactgaacaatttt 14020762  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 8754138 - 8754192
Alignment:
Q  36 ttacagtaaaaaattcagtgaagtcatgtttctgttgatgaacgagttctcactg 90  Q
    |||||| |||||||||||||||||||||||| |||||||||| |||||| |||||    
T  8754138 ttacagcaaaaaattcagtgaagtcatgtttttgttgatgaatgagttcccactg 8754192  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 10507289 - 10507236
Alignment:
Q  36 ttacagtaaaaaattcagtgaagtcatgtttctgttgatgaacgagttctcact 89  Q
    |||||||||||||||||||||| ||||||||  ||||||||| |||||| ||||    
T  10507289 ttacagtaaaaaattcagtgaaatcatgttttcgttgatgaatgagttcccact 10507236  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 10507420 - 10507392
Alignment:
Q  10 caatgcatgtgaaagcccactaagcttta 38  Q
    |||||||||||||||||||||||||||||    
T  10507420 caatgcatgtgaaagcccactaagcttta 10507392  T

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