View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16891_high_5 (Length: 364)
Name: NF16891_high_5
Description: NF16891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16891_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 260
Target Start/End: Complemental strand, 5061261 - 5061010
Alignment:
| Q |
14 |
agaccaaaaatgttgtttttccttcattctcttacggtattttcgagaacccattcactacacatatctcgtgcagtgtgagtgtggtcagaactcagaa |
113 |
Q |
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| T |
5061261 |
agaccaaaaatgttgtttttccttcattctcttacggtattttcgagaacccattcactacacatatctcgtgcagtgtgagtgtggtcagaactcagaa |
5061162 |
T |
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| Q |
114 |
gcacttggttcatcccacct-----accctctttttgatcaatccacctactgaatttattattttcaatgtttatgtcaattctcaatttattttaacc |
208 |
Q |
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| T |
5061161 |
gcacttggttcatcccaccccacccaccctctttttgatcaatccacctactgaatttattattttcaatgtttatgttaattctcaatttattttaccc |
5061062 |
T |
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| Q |
209 |
attgttttcccccacccactggccacttccttaatttcatctgaacaagttc |
260 |
Q |
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| T |
5061061 |
attgtttttccccacacactggccacttccttaatttcatctgaccaagttc |
5061010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 325 - 364
Target Start/End: Complemental strand, 5060949 - 5060910
Alignment:
| Q |
325 |
atcctttgtttggtttccacgttcaaactcttgttgtaaa |
364 |
Q |
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| T |
5060949 |
atcctttgtttggtttccacgttcaaactcttgttgtaaa |
5060910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 316 - 351
Target Start/End: Complemental strand, 5050086 - 5050051
Alignment:
| Q |
316 |
aacaaacccatcctttgtttggtttccacgttcaaa |
351 |
Q |
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| T |
5050086 |
aacaaacccatcctttgtttggtttccacgttcaaa |
5050051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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