View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16891_high_8 (Length: 353)
Name: NF16891_high_8
Description: NF16891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16891_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 23 - 323
Target Start/End: Complemental strand, 31541866 - 31541573
Alignment:
| Q |
23 |
gacatcatcacgtgtgaatgatggnnnnnnnctcttagatttttcatgaaaaatttgatgggaaaagtaatcaaattaagtgatctttgatcgcattata |
122 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31541866 |
gacatcaacacgtgtgaatgatggtttttctctcttagatttttcatgaaaaatttgatgggaaaagcaatcaaattaagtgatctttgatcgcattata |
31541767 |
T |
|
| Q |
123 |
ttgttgctctctctttacagcctataatagttgatggtatactctgttaagtgttaacaatagtgctaatgggaacagtagcttgaaaa-gggttcaacc |
221 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
31541766 |
ttgttgttctctctttacagcctataatagttgatggtatactctgttaagtgttaacaataatgctaatgggaacagtggcttgaaaaggggttcaacc |
31541667 |
T |
|
| Q |
222 |
tcgttaataattaatttaagatcatcnnnnnnnnnnnnnnnatatatatattggtccatgatccacctctattcatattacaattacaatttacattcct |
321 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31541666 |
tcgttaataattaatttaagatcatc--------tttttttatatatatattggtccatgatccacctctattcatattacaattgcaatttacattcct |
31541575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University