View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16891_low_1 (Length: 406)
Name: NF16891_low_1
Description: NF16891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16891_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 176 - 350
Target Start/End: Complemental strand, 38498096 - 38497922
Alignment:
| Q |
176 |
atgattagggataaacttgagttgaaagctattaaagatggatcagtgagctatgctgcattggagaagaaggctgagttgtatgataagttagttaagg |
275 |
Q |
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| T |
38498096 |
atgattagggataaacttgagttgaaagctattaaagatggatcagtgagctatgctgcattggagaagaaggctgagttgtatgataagttagttaagg |
38497997 |
T |
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| Q |
276 |
gagaattgtctgatgaagaggataaagagaagtattgtgttgattttgttcgtaagagcgatgatcatgatgatg |
350 |
Q |
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| T |
38497996 |
gagaattgtctgatgaagaggataaagagaagtattgtgttgattttgttcgtaagagcgatgatcatgatgatg |
38497922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 38498271 - 38498130
Alignment:
| Q |
1 |
tagaatcaattatggaggcaaaataaattatactcaagagcagccaaacctgtcagaattgcttctaaagtggaaccaaacatacatttatatctttaga |
100 |
Q |
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| T |
38498271 |
tagaatcaattatggaggcaaaataaattatactcaagagcagccaaacctgtcagaattgcttctaaagtggaaccaaacatacatttatatctttaga |
38498172 |
T |
|
| Q |
101 |
taatacctaattgaatttctgtttgttgataattgagattaa |
142 |
Q |
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| T |
38498171 |
taatacctaattgaatttgtgtttgttgataattgagattaa |
38498130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 39733714 - 39733747
Alignment:
| Q |
1 |
tagaatcaattatggaggcaaaataaattatact |
34 |
Q |
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| T |
39733714 |
tagaatcaattatggaggcagaataaattatact |
39733747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 46344915 - 46344967
Alignment:
| Q |
8 |
aattatggaggcaaaataaattatactcaagagcagccaaacctgtcagaatt |
60 |
Q |
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||||||||||||||||| ||||||||| | |||| |||||| |||||||||| |
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| T |
46344915 |
aattatggaggcaaaatcaattatacttgaaagcaaccaaacatgtcagaatt |
46344967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 31453391 - 31453332
Alignment:
| Q |
1 |
tagaatcaattatggaggcaaaataaattatactcaagagcagccaaacctgtcagaatt |
60 |
Q |
| |
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||||||||||||| ||||||||||||||| ||||||| | || |||||| || ||||||| |
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| T |
31453391 |
tagaatcaattatagaggcaaaataaattctactcaacatcaaccaaacatgacagaatt |
31453332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 44505934 - 44505893
Alignment:
| Q |
1 |
tagaatcaattatggaggcaaaataaattatactcaagagca |
42 |
Q |
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||||| |||||||||||||||||| |||| |||||||||||| |
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| T |
44505934 |
tagaaacaattatggaggcaaaatcaattttactcaagagca |
44505893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 5489923 - 5489981
Alignment:
| Q |
1 |
tagaatcaattatggaggcaaaataaattatactcaagagcagccaaacctgtcagaat |
59 |
Q |
| |
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||||||||||| |||||||||||| |||| |||||| ||||| |||||| ||| ||||| |
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| T |
5489923 |
tagaatcaattttggaggcaaaattaattctactcaggagcaaccaaacatgtaagaat |
5489981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2234291 - 2234339
Alignment:
| Q |
1 |
tagaatcaattatggaggcaaaataaattatactcaagagcagccaaac |
49 |
Q |
| |
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||||||||||| ||||||||||| |||| |||||||||||| |||||| |
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| T |
2234291 |
tagaatcaattcaggaggcaaaatcaattctactcaagagcaaccaaac |
2234339 |
T |
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