View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16892_high_1 (Length: 521)
Name: NF16892_high_1
Description: NF16892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16892_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 434
Target Start/End: Complemental strand, 3529254 - 3528838
Alignment:
| Q |
18 |
attggtgcaactatgtgaccgatttatatgaacattgaagcacaaacaaagttggtggttgatccatgtatggatacttgtatcgaaagtcttcctcccg |
117 |
Q |
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| T |
3529254 |
attggtgcaactatgtgaccgatttatatgaacattgaagcacaaacaaagttggtggttgatccatgtatggatacttgtatcgaaagtcttccttccg |
3529155 |
T |
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| Q |
118 |
atatggaagtctgacgacatttcttactgattgttgttaacaacaatacaagtatatatgcagaatcacaattcagttcgtgcagtgatatcaaatttag |
217 |
Q |
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| T |
3529154 |
atatggaagtctgacgacatttcttattgattgttgttaacaacaatacaattatatatgcagaatcacaattcagttcgtgcagtgatatcaaatttag |
3529055 |
T |
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| Q |
218 |
agctattgtgggaacacacttgagctcgttgatttgaaggaatttgtaaggtgtacaagccaaggcgcttactcatgtggataaaaacaagagaaagaaa |
317 |
Q |
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| T |
3529054 |
agctattgtgggaacacgcttgagctcgttgattcgaaggaatttgtaaggtgtacaagccaaggcgcttactcatgtggataaaaacaagagaaagaaa |
3528955 |
T |
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| Q |
318 |
cattttctactttagaagcaagtcatgaaaagagcaaacaatgatggcaaaaatgaaggnnnnnnnggaacaaggattgtgacatgttctgtttgtggga |
417 |
Q |
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| T |
3528954 |
cattttctactttagaatcaagtcatgaaaagagcaaacaatgatggcaaaaatgaaggaaaaaaaggaacaaggattgtgacatgttctgttcgtggga |
3528855 |
T |
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| Q |
418 |
tttaaataaaatggtat |
434 |
Q |
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| T |
3528854 |
tttaaataaaatggtat |
3528838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 426 - 516
Target Start/End: Complemental strand, 3528012 - 3527923
Alignment:
| Q |
426 |
aaatggtattgattctcttcaaaattggtaggtctttcttagtcatcatcctcagaatggtgtatgacttttctaaaatgcctttgctact |
516 |
Q |
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||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||| |
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| T |
3528012 |
aaatggtattgattctcttcaaa-ttgataggtctttcttagtcatcatcctcagaagggtgtatgtcttttctaaaatgcctttggtact |
3527923 |
T |
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