View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16892_high_10 (Length: 325)
Name: NF16892_high_10
Description: NF16892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16892_high_10 |
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| [»] chr5 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 21 - 325
Target Start/End: Original strand, 19577674 - 19577978
Alignment:
| Q |
21 |
atcaaatatggaacaaactcaacaagaaattgggatcaaagtctacaatgcaacacctccaccacaagaggccataggcggcgtcacacaccagccttcc |
120 |
Q |
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| T |
19577674 |
atcaaatatggaacaaactcaacaagaaattgggatcaaagtctacaatgcaactcctccaccacaagaggccataggcggcgtcacacaccagcctttc |
19577773 |
T |
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| Q |
121 |
gatccaccggaacctggcaagaaacgtcgcgccataatggcaaaaggtgtccaaaaaaccctctcaaaaacatccttactcggaaacttccttccaacag |
220 |
Q |
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| T |
19577774 |
gatccaccggaacctggcaagaaacgtcgcgccataatggcaaaaggtgtccaaaaaaccctctcaaaaacatccttactcggaaacttccttccaacag |
19577873 |
T |
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| Q |
221 |
gaacactcataacattcgaaatggtccttccttcaatctaccgaaatggtcaatgcactcatgttcataccatcatgatccatttcctcttaatcatgtg |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19577874 |
gaacactcataacattcgaaatggtccttccttcaatctaccgaaatggtcaatgcactcatgttcataccatcatgatccatttcctcttaatcatgtg |
19577973 |
T |
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| Q |
321 |
tgcac |
325 |
Q |
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||||| |
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| T |
19577974 |
tgcac |
19577978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 21 - 325
Target Start/End: Complemental strand, 2787920 - 2787616
Alignment:
| Q |
21 |
atcaaatatggaacaaactcaacaagaaattgggatcaaagtctacaatgcaacacctccaccacaagaggccataggcggcgtcacacaccagccttcc |
120 |
Q |
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|||||||||||||||||| |||||||||||||| |||||| |||||||| ||||||| ||||||||||| | ||| || | ||| || || |||||||| |
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| T |
2787920 |
atcaaatatggaacaaacacaacaagaaattggaatcaaaatctacaatacaacaccgccaccacaagaagtcatgggggccgtaacgcagcagccttct |
2787821 |
T |
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| Q |
121 |
gatccaccggaacctggcaagaaacgtcgcgccataatggcaaaaggtgtccaaaaaaccctctcaaaaacatccttactcggaaacttccttccaacag |
220 |
Q |
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||||||||||||| ||||||||| ||||| ||||||||||| ||||| || ||||||||||| |||||||| |||||||| || |||||||||||| ||| |
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| T |
2787820 |
gatccaccggaacatggcaagaagcgtcgtgccataatggcgaaaggcgtgcaaaaaaccctttcaaaaacttccttacttggtaacttccttccatcag |
2787721 |
T |
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| Q |
221 |
gaacactcataacattcgaaatggtccttccttcaatctaccgaaatggtcaatgcactcatgttcataccatcatgatccatttcctcttaatcatgtg |
320 |
Q |
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|||||||| | ||||||||||||||||||||||| ||||| | || || ||||| ||||| || || |||||||||||||||||||| ||||| || || |
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| T |
2787720 |
gaacactcctcacattcgaaatggtccttccttcgatctataggaacggccaatgtactcacgtacacaccatcatgatccatttccttttaattatatg |
2787621 |
T |
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| Q |
321 |
tgcac |
325 |
Q |
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||||| |
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| T |
2787620 |
tgcac |
2787616 |
T |
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