View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16892_high_13 (Length: 313)
Name: NF16892_high_13
Description: NF16892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16892_high_13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 65 - 313
Target Start/End: Original strand, 9659667 - 9659912
Alignment:
| Q |
65 |
actaaagggttgatttttattgacagcatgagatacctttatacattgatcgcttggtatgcatgcatacacagatacata--atatcaatattcataat |
162 |
Q |
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| T |
9659667 |
actaaagggttgatttttattgacagcatgagttacctttatacattgatcgcttggtatgcat----acacggatacatataatatcaatattcataat |
9659762 |
T |
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| Q |
163 |
agaagatgcagcaaaatattgatatttagcatttaagagagaaaagtggaaataaaattatattgatacaagttgagattgtgaatataaattgttatca |
262 |
Q |
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| T |
9659763 |
agaagatgcagcaaaatattgatatt-agcatttaagagagaaaagtggaaataaaattatattgatagaagttgagattgtgaattgaaattgttatca |
9659861 |
T |
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| Q |
263 |
ctaagtacctatttgctaaagttaaatcatggagaaataattagtatttac |
313 |
Q |
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| T |
9659862 |
ctaaatacctatttgctaaagttaaatcatggtgaaataattagtagttac |
9659912 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 36000025 - 35999977
Alignment:
| Q |
173 |
gcaaaatattgatatttagcatttaagagagaaaagtggaaataaaatt |
221 |
Q |
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| T |
36000025 |
gcaaaatattgatattaagcaccgaagagagaaaagtggaagtaaaatt |
35999977 |
T |
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