View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16892_high_1_N (Length: 603)
Name: NF16892_high_1_N
Description: NF16892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16892_high_1_N |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 216 - 598
Target Start/End: Original strand, 35379795 - 35380176
Alignment:
| Q |
216 |
tagctatctacc-gactgctatggaatatgcatgatatggagggaccaatagtgaaatgcatggatgtgcatgtgatcaacataaagaaggtgaggggtt |
314 |
Q |
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| T |
35379795 |
tagctatctacccgactactacgcaatatgcatgat--ggagggaccaatagggaaatgcatggatgtgcatgtgatcaacataaagaaggtgaagggtt |
35379892 |
T |
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| Q |
315 |
ggtcagagtagcccccctccatttttactgaattaatctttcaccttctgctctttctttcttttagttaaagtatgttgtcacttaaaaagcagaatct |
414 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35379893 |
ggtcagaggagcccccctccatttttactgaattaatctttcaccttctgctctttctttcttttagttaaagtatgttgtcacttaaaaagcagaatct |
35379992 |
T |
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| Q |
415 |
ttccaaaaaagaccatgcaaaaccaccatcaactaaaatgttgatagaatcttagcaaaatcaattatctgaaaaacctttcttattctannnnnnnnnn |
514 |
Q |
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| T |
35379993 |
ttccaaaaaagaccatgcaaaaccaccatcaactaaaatgttgatagaatcttagcaaaatcaattatctgaaaaacctttcttattctattttttattt |
35380092 |
T |
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| Q |
515 |
nnnncacctaaatgttcatatctaacagttggatgttgggggatcatcaaatgggccactgaaccctgcttgtaagtacactaa |
598 |
Q |
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| T |
35380093 |
ttttcacctaaatgttcatatctaacagttggatgttgggggatcatcaaatgggccactgaaccctgcttgtaagtactctaa |
35380176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 35379270 - 35379471
Alignment:
| Q |
16 |
atactaatggaaatacacacgttttttaaccccaaaaacactcacgttttttaacctgaaaatttatggatatataagttggaggtaaaacaagctagag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35379270 |
atactaatggaaatacacacgttttttaaccccaaaaatactcacgttttttaacccgaaaatttatggatataaaagttggaggtaaaacaagctagag |
35379369 |
T |
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| Q |
116 |
gaggcccctgattgtttgggagaatcaactgtttcgagatcaacagaactagttnnnnnnnngttttaaatttgttaattattgaagaaaaatacatatc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
35379370 |
gaggcccctgattgtttgggagaatcaactgtttcgagatcaacagaactagttaaaaaaaagttttaaatttgttaattattgaagaaaaatatatatc |
35379469 |
T |
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| Q |
216 |
ta |
217 |
Q |
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|| |
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| T |
35379470 |
ta |
35379471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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