View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16892_high_2 (Length: 468)
Name: NF16892_high_2
Description: NF16892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16892_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 76 - 447
Target Start/End: Complemental strand, 31347208 - 31346837
Alignment:
| Q |
76 |
catcaaatactaatgaatctctattgcctcaattattggattcttctccatacaatagtgaaaaccaaaccactctttctgatttctctcaaaacaaggt |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31347208 |
catcaaatactaatgaatctctattgcctcaattattggattcttctccatacaatagtgaaaaccaaaccactctttctgatttctctcaaaacaaggt |
31347109 |
T |
|
| Q |
176 |
gaaaccaaaatcacaagatgacaacattgttcataacaatgaaactagtatcttgaacatttcatcctcttcaaagcaaatggatgtttatcctttagct |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31347108 |
gaaaccaaaatcacaagatgacaacattgttcataacaatgaaactagtatcttgaacatttcatcctcttcaaaacaaatggatgtttatcctttagct |
31347009 |
T |
|
| Q |
276 |
gaagtaatagctgccgatttgaaccaaactacaatggtcggaaattcatcaaactttttcttctctcaagaccaatcgatgttgaggatgcagttggaga |
375 |
Q |
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|||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31347008 |
gaagtaatagctgctgatttgaaccaaacctcaatggtcggaaattcgtcaaactttttcttctctcaagaccaatcgctgttgaggatgcagttggaga |
31346909 |
T |
|
| Q |
376 |
atgagaatattggaacaacctcaaaccaaagcataaaccaagagttttcttttgggagatattctgatgatg |
447 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31346908 |
atgagaatattggaacaacctcaaaccaaagcataaaccaagagttttcttttgggagatattctgatgatg |
31346837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 76 - 400
Target Start/End: Complemental strand, 31357868 - 31357544
Alignment:
| Q |
76 |
catcaaatactaatgaatctctattgcctcaattattggattcttctccatacaatagtgaaaaccaaaccactctttctgatttctctcaaaacaaggt |
175 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31357868 |
catcaaatactaatgaatctctattgcctcaattattggattcttctccatacaatagtgaaaaccaaaccactctttctgatttctctcaaaacaaggt |
31357769 |
T |
|
| Q |
176 |
gaaaccaaaatcacaagatgacaacattgttcataacaatgaaactagtatcttgaacatttcatcctcttcaaagcaaatggatgtttatcctttagct |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
31357768 |
gaaaccaaaatcacaagatgacaacattgttcataacaatgaaactagtatcttgaacatttcatcctcttcaaaacaattggatgtttatcctttagct |
31357669 |
T |
|
| Q |
276 |
gaagtaatagctgccgatttgaaccaaactacaatggtcggaaattcatcaaactttttcttctctcaagaccaatcgatgttgaggatgcagttggaga |
375 |
Q |
| |
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|||||||||||||| |||||||||||||| |||||||||| ||||| ||||||||||||||||||||||| |||| | ||||||||||||||||||||| |
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|
| T |
31357668 |
gaagtaatagctgctgatttgaaccaaacctcaatggtcgggaattcgtcaaactttttcttctctcaagaacaattgctgttgaggatgcagttggaga |
31357569 |
T |
|
| Q |
376 |
atgagaatattggaacaacctcaaa |
400 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
31357568 |
atgagaatattggaacaacctcaaa |
31357544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 176 - 336
Target Start/End: Original strand, 2920267 - 2920430
Alignment:
| Q |
176 |
gaaaccaaaatcacaagatgacaacattgttcataacaatgaaactagtatcttgaacatttcatcctcttcaaagcaaatggatgtttat---ccttta |
272 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
2920267 |
gaaatcaaaaacacaagatgacaacattgttcataacaatgaaacttgtatcttgaacatttcatcctcttcaaaacaaatggatgtttataaccctttc |
2920366 |
T |
|
| Q |
273 |
gctgaagtaatagctgccgatttgaaccaaactacaatggtcggaaattcatcaaactttttct |
336 |
Q |
| |
|
||||||| || || ||| |||| |||||||| |||||||||| ||||||||||||||||||| |
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|
| T |
2920367 |
gctgaaggaacagttgctgattccaaccaaacctcaatggtcgggaattcatcaaactttttct |
2920430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 176 - 346
Target Start/End: Original strand, 2925652 - 2925822
Alignment:
| Q |
176 |
gaaaccaaaatcacaagatgacaacattgttcataacaatgaaactagtatcttgaacatttcatcctcttcaaagcaaatggatgtttatcctttagct |
275 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||| ||||||||| |
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|
| T |
2925652 |
gaaaccaaaaacacaatatgacaacattgttcataacaatgaaacaagtatcttgaacatttcatcgtcttcaaaacaaatggatgtttaccctttagct |
2925751 |
T |
|
| Q |
276 |
gaagtaatagctgccgatttgaaccaaactacaatggtcggaaattcatcaaactttttcttctctcaaga |
346 |
Q |
| |
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| || || || || ||| |||| ||| |||||| ||| ||||| ||||||||||||||||| ||||| |
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|
| T |
2925752 |
ggagcaacagtggctgatcccaacctaacctcaatggccgggaattcttcaaactttttcttctcccaaga |
2925822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 176 - 329
Target Start/End: Original strand, 29272304 - 29272460
Alignment:
| Q |
176 |
gaaaccaaaatcacaagatgacaacattgttcataacaatgaaactagtatcttgaacatttcatcctcttcaaagcaaatggatgtttat---ccttta |
272 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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|
| T |
29272304 |
gaaaccaaaaacacaagatgacaacattgttcacaacaatgaaactagtatcttgaacatttcatcctcttcaaaacaaatggatgtttataacccttta |
29272403 |
T |
|
| Q |
273 |
gctgaagtaatagctgccgatttgaaccaaactacaatggtcggaaattcatcaaac |
329 |
Q |
| |
|
||||||| || | ||| |||| |||||||| |||||||||| |||||||||||| |
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|
| T |
29272404 |
gctgaagcaacaattgctgattccaaccaaacctcaatggtcgggaattcatcaaac |
29272460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 176 - 335
Target Start/End: Original strand, 9447671 - 9447837
Alignment:
| Q |
176 |
gaaaccaaaatcacaagatgacaacattgttcataacaatgaaactag----tatcttgaacatttcatcctcttcaaagcaaatggatgtttat---cc |
268 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
9447671 |
gaaaccaaaaacacaagacgacaacattgttcataacaatgaaactagtatatatcttgaacatttcatcctcttcaaaacaaatggatgtttataaccc |
9447770 |
T |
|
| Q |
269 |
tttagctgaagtaatagctgccgatttgaaccaaactacaatggtcggaaattcatcaaactttttc |
335 |
Q |
| |
|
||||||||||| || | ||| ||| |||||||| |||| ||||| |||||||||||||||||| |
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|
| T |
9447771 |
tttagctgaagcaacaattgcttattccaaccaaacctcaattgtcgggaattcatcaaactttttc |
9447837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 9447562 - 9447611
Alignment:
| Q |
76 |
catcaaatactaatgaatctctattgcctcaattattggattcttctcca |
125 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||| ||||||| ||||||| |
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|
| T |
9447562 |
catcaaatactaatgcatctctattgcctccattgttggattattctcca |
9447611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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