View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16892_high_3 (Length: 412)
Name: NF16892_high_3
Description: NF16892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16892_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 5396425 - 5396829
Alignment:
| Q |
1 |
agctttatccttacatattcattatcaaacatgggtgatattagcaatggaaatcttgatgtggttatgaatgtaaacgatgatgctaccaaaaaatgtg |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5396425 |
agctttatccttacatattcattattaaacatgggtgatattagcaatggaaatcttgatgtggttatgaatataaacgatgatgctaccaaaaaatgtg |
5396524 |
T |
|
| Q |
101 |
acgacacaaccattgatgatcatgttcctcttttgcaaaaggtgattttgtttatcttccnnnnnnnttaattgttgtttatggttaattaattagatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5396525 |
acgacacaaccattgatgatcatgttcctcttttgcaaaaggtgattttgtttatcttccaaaaaaattaattgttgtttatggttaattaattagatgt |
5396624 |
T |
|
| Q |
201 |
tctcactnnnnnnnncggatgttttgctttgattgttgaatatagttggtagcagaagtggtgggaacattcttcttgatatttgctggatgtggttctg |
300 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
5396625 |
tctcactaaaaaaaatggatgttttgctttgattgttgaatatagttggtagcagaagtggtgggaacattcttcttgatatttgctggatgtgctgctg |
5396724 |
T |
|
| Q |
301 |
tgctgct---cctcaacaaggataaagttgtcacacttcctggaatatcaattgtttggggacttgctgttatggtattggtctattctattggtcatat |
397 |
Q |
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|| || | ||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
5396725 |
tggtggtgaaccttaacaatgataaagttgtgacacttcctggaatatcaattgtttggggacttgctgttatggtattagtctattctataggtcatat |
5396824 |
T |
|
| Q |
398 |
ctctg |
402 |
Q |
| |
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||||| |
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| T |
5396825 |
ctctg |
5396829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 5408358 - 5407949
Alignment:
| Q |
1 |
agctttatccttacatattcattatcaaacatgggtgatatt------agcaatggaaatcttgatgtggttatgaatgtaaacgatgatgctaccaaaa |
94 |
Q |
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||||||||| | ||||||||||||| ||||||||||||| || |||||||||| ||||||||||||||||||||||||||||| || | ||||| |
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| T |
5408358 |
agctttatcttcacatattcattattaaacatgggtgatttttcatctagcaatggaagtcttgatgtggttatgaatgtaaacgatggcgcaaacaaaa |
5408259 |
T |
|
| Q |
95 |
aatgtgacgacacaaccattgatgatcatgttcctcttttgcaaaaggtgattttgtttatcttccnnnnnnnttaattgttgtttatggttaattaatt |
194 |
Q |
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||||||| | ||||||||||||||||||||||||| ||||||||||||||| ||| |||||| | ||||||||||||||||||||||||||| |
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| T |
5408258 |
aatgtgatgccacaaccattgatgatcatgttccttttttgcaaaaggtgactttatttatcctttcaaaaaattaattgttgtttatggttaattaatt |
5408159 |
T |
|
| Q |
195 |
agatgttctcactnnnnnnnncggatgttttgctttgattgttgaatatagttggtagcagaagtggtgggaacattcttcttgatatttgctggatgtg |
294 |
Q |
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|||| |||| ||| |||||| |||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5408158 |
agatcttctgactaaaaacat-ggatgtgttgcgttgattgttgagtatagttggtagcagaagtggtgcgaacattcttcttgatatttgctggatgtg |
5408060 |
T |
|
| Q |
295 |
gttctgtgctgct---cctcaacaaggataaagttgtcacacttcctggaatatcaattgtttggggacttgctgttatggtattggtctattctattgg |
391 |
Q |
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|||||||| || | ||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| || |
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| T |
5408059 |
gttctgtggtggtgaaccttaacaatgataaagttgtgacacttcctggaattgcaattgtttggggacttgttgttatggtattagtctattctatagg |
5407960 |
T |
|
| Q |
392 |
tcatatctctg |
402 |
Q |
| |
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||||||||||| |
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| T |
5407959 |
tcatatctctg |
5407949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 402
Target Start/End: Original strand, 5388549 - 5388720
Alignment:
| Q |
234 |
tgttgaatatagttggtagcagaagtggtgggaacattcttcttgatatttgctggatgtggttctgtgctgctc---ctcaacaaggataaagttgtca |
330 |
Q |
| |
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|||||||| |||||||||||||| ||||| || || | ||||||||||||||| || |||| | |||| || | || |||| || ||||| || | |
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| T |
5388549 |
tgttgaatgtagttggtagcagaggtggtagggacgtacttcttgatatttgcagggtgtgctgctgttgtggtgaatcttgacaatgacaaagtagtaa |
5388648 |
T |
|
| Q |
331 |
cacttcctggaatatcaattgtttggggacttgctgttatggtattggtctattctattggtcatatctctg |
402 |
Q |
| |
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||| |||||| || |||||||||||||| || |||||||||| ||||| || ||| ||||||| ||||||| |
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| T |
5388649 |
cacatcctgggatctcaattgtttggggcctcactgttatggttttggtttactctgttggtcacatctctg |
5388720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 402
Target Start/End: Original strand, 5402448 - 5402529
Alignment:
| Q |
321 |
aaagttgtcacacttcctggaatatcaattgtttggggacttgctgttatggtattggtctattctattggtcatatctctg |
402 |
Q |
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||||| || |||| |||||| || |||||||||||||| || |||||||||| ||||| || ||| ||||||| ||||||| |
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| T |
5402448 |
aaagtagtaacacatcctgggatctcaattgtttggggcctcactgttatggttttggtttactctgttggtcacatctctg |
5402529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 324 - 402
Target Start/End: Original strand, 36267637 - 36267715
Alignment:
| Q |
324 |
gttgtcacacttcctggaatatcaattgtttggggacttgctgttatggtattggtctattctattggtcatatctctg |
402 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||| ||||| |||| || ||| ||||||| ||||||| |
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| T |
36267637 |
gttgtaacacttcctggaatttcaattgtttggggacttgctgtgatggtgctggtttactctcttggtcacatctctg |
36267715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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